Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015 -06-23] 326,828 sequences; 1,595,295,449 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq212 93.3 4e-14 seq95 82.4 8e-11 >seq212 Length=4710727 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || |||||||| |||||||| || || ||||| || || ||||| || | ||||| Sbjct 4384858 TCATCTCTGCTAATAAGTTCATTAGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCTTC 4384917 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | ||||||||| |||||||| || ||||||||||| || || ||||| | ||||| || Sbjct 4384918 AGCCAGAATATAGCAGCAAAGGAACCCGAAAAGAAGATTCCTTCAACTGCAGCAAAGGC 4384976 >seq95 Length=9561987 Score = 82.4 bits (90), Expect = 8e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 || || || ||||| || | ||||||||||||||| ||||| || || ||||| ||||| Sbjct 3108655 ATGTATGTGTCAATTAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGCAATCTGG 3108596 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTC 16569 || |||||||| || || || || | || |||||||| Sbjct 3108595 AAGCCATAGAAACAACGGGCTTCTGTGATCTGTACTTC 3108558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 509325093180960