Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015
-06-23] 326,828 sequences; 1,595,295,449 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq95 120 4e-22
seq319586 84.2 3e-11
seq3026 84.2 3e-11
seq212 84.2 3e-11
>seq95
Length=9561987
Score = 120 bits (132), Expect = 4e-22
Identities = 108/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216
|||| |||||||| || | ||| || ||||| |||||||| ||||||| || | || |
Sbjct 3110867 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 3110808
Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276
| |||||||| || || |||||||| ||||||||||| |||||||| ||||| ||||| |
Sbjct 3110807 TCAGCCAAAAAATTGATGCAAATGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 3110748
Query 24277 CAATAAGTCTTTCTCC 24292
| || | | ||||||
Sbjct 3110747 CTATTACACGTTCTCC 3110732
Score = 96.9 bits (106), Expect = 4e-15
Identities = 85/106 (80%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454
|||||||| ||||| ||||| | |||||| |||||||| ||||| || ||||| |||||
Sbjct 3108662 ATCTTTAATGTATGTGTCAATTAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGC 3108603
Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 24500
|| || || || |||||||| | || || || ||||||||||||
Sbjct 3108602 AATCTGGAAGCCATAGAAACAACGGGCTTCTGTGATCTGTACTTCT 3108557
>seq319586
Length=853
Score = 84.2 bits (92), Expect = 3e-11
Identities = 118/166 (71%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827
|||| || | ||| || ||||||||||| | ||| || || || || || || || || |
Sbjct 12 CACTGAACACTTTCTTAGTTTCTTTGTGCAAATTGGACACTGCAATCCTCGCTGCCAGGA 71
Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887
| || || || || |||| ||||| ||| || || |||| || | |||||| ||||
Sbjct 72 TAGCGTAGTCAGGGTGTTTGGTAGTCAGAGTTGCAGCCGTTTCAGCAGCCAGAGTATCCA 131
Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933
||| || || || || ||| | || | ||||| || || |||||
Sbjct 132 GTTCCACTGTCGTGACACCACTGTACAGCCCTTGAATCACTTTCAT 177
>seq3026
Length=70695
Score = 84.2 bits (92), Expect = 3e-11
Identities = 118/166 (71%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827
|||| || | ||| || ||||||||||| | ||| || || || || || || || || |
Sbjct 51076 CACTGAACACTTTCTTAGTTTCTTTGTGCAAATTGGACACTGCAATCCTCGCTGCCAGGA 51017
Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887
| || || || || |||| ||||| ||| || || |||| || | |||||| ||||
Sbjct 51016 TAGCGTAGTCAGGGTGTTTGGTAGTCAGAGTTGCAGCCGTTTCAGCAGCCAGAGTATCCA 50957
Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933
||| || || || || ||| | || | ||||| || || |||||
Sbjct 50956 GTTCCACTGTCGTGACACCACTGTACAGCCCTTGAATCACTTTCAT 50911
>seq212
Length=4710727
Score = 84.2 bits (92), Expect = 3e-11
Identities = 70/86 (81%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 24522 TTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATAT 24581
|||||||| || ||||| ||||||||||||||||| |||| ||||| ||||| |||
Sbjct 4390604 TTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCCAGAACATGAGAGATAAAGTAT 4390663
Query 24582 TTTTCGTCTGGTGTTAGTTTATTCCA 24607
||||| |||| | |||| || |||||
Sbjct 4390664 TTTTCATCTGCTTTTAGCTTGTTCCA 4390689
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 591296039461440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |