Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015 -06-23] 326,828 sequences; 1,595,295,449 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq2849 354 7e-93 SEQ51698 138 1e-27 >seq2849 Length=1082 Score = 354 bits (392), Expect = 7e-93 Identities = 196/196 (100%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 3466 GTACAGGAAGAGGTTTATACTAAACTGTTACATTGCAAACGTGGTTTCGTGTGCCAAGTG 3525 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 905 GTACAGGAAGAGGTTTATACTAAACTGTTACATTGCAAACGTGGTTTCGTGTGCCAAGTG 846 Query 3526 TGAAAACCGATGTTTAATCAAGGCTCTGACGCATTTCTACAACCACGACTCCAAGTGTGT 3585 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 845 TGAAAACCGATGTTTAATCAAGGCTCTGACGCATTTCTACAACCACGACTCCAAGTGTGT 786 Query 3586 GGGTGAAGTCATGCATCTTTTAATCAAATCCCAAGATGTGTATAAACCACCAAACTGCCA 3645 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 785 GGGTGAAGTCATGCATCTTTTAATCAAATCCCAAGATGTGTATAAACCACCAAACTGCCA 726 Query 3646 AAAAATGAAAACTGTC 3661 |||||||||||||||| Sbjct 725 AAAAATGAAAACTGTC 710 Score = 176 bits (194), Expect = 4e-39 Identities = 97/97 (100%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 3828 ATCGCTGAGGTAATATTTAAAATCATTTTCAAATGATTCACAGTTAATTTGCGACAATAT 3887 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 401 ATCGCTGAGGTAATATTTAAAATCATTTTCAAATGATTCACAGTTAATTTGCGACAATAT 342 Query 3888 AATTTTATTTTCACATAAACTAGACGCCTTGTCGTCT 3924 ||||||||||||||||||||||||||||||||||||| Sbjct 341 AATTTTATTTTCACATAAACTAGACGCCTTGTCGTCT 305 Score = 174 bits (192), Expect = 1e-38 Identities = 96/96 (100%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 4142 TTATTAAATTTATATAATCAATGAATTTGGGATCGTCGGTTTTGTACAATATGTTGCCGG 4201 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 101 TTATTAAATTTATATAATCAATGAATTTGGGATCGTCGGTTTTGTACAATATGTTGCCGG 42 Query 4202 CATAGTACGCAGCTTCTTCTAGTTCAATTACACCAT 4237 |||||||||||||||||||||||||||||||||||| Sbjct 41 CATAGTACGCAGCTTCTTCTAGTTCAATTACACCAT 6 Score = 172 bits (190), Expect = 5e-38 Identities = 95/95 (100%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 3244 TTCCGGACTGCGATTGTACATGCTGTTAACGGCTCCGCCCACTATTAATGAAATTAAAAA 3303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1077 TTCCGGACTGCGATTGTACATGCTGTTAACGGCTCCGCCCACTATTAATGAAATTAAAAA 1018 Query 3304 TTCCAATTTTAAAAAACGCAGCAAGAGAAACATTT 3338 ||||||||||||||||||||||||||||||||||| Sbjct 1017 TTCCAATTTTAAAAAACGCAGCAAGAGAAACATTT 983 >SEQ51698 Length=101 Score = 138 bits (152), Expect = 1e-27 Identities = 96/113 (85%), Gaps = 17/113 (15%) Strand=Plus/Minus Query 1875 ATGAACACGTATAGCTTTATCACAAACTGTATATTTTAAACTGTTAGCGACGTCCTTGGC 1934 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 101 ATGAACACGTATAGCTTTATCACAAACTGTATATTTTAAACTGTTAGCGACGTC------ 48 Query 1935 CACGAACCGGACCTGTTGGTCGCGCTCTAGCACGTACCGCAGGTTGAACGTAT 1987 |||||||||||||||||||||||||||||||||||||||||| Sbjct 47 -----------CCTGTTGGTCGCGCTCTAGCACGTACCGCAGGTTGAACGTAT 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426629845084340