Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015 -06-23] 326,828 sequences; 1,595,295,449 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq2588 122 1e-22 seq9961 105 8e-18 >seq2588 Length=442948 Score = 122 bits (134), Expect = 1e-22 Identities = 126/163 (77%), Gaps = 3/163 (2%) Strand=Plus/Plus Query 83380 CTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCG 83439 ||||||| || |||||| ||||||||||| || ||||| || ||||| ||||||| ||| Sbjct 251322 CTGGGCGCTTACCTGGTAGCCGAACTGGTTGCAGGGGAAGCCCAGCACGACCAGCCGCCG 251381 Query 83440 AGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCA 83499 | ||| | | |||||||| ||| | ||| ||| | ||||| || ||| | ||||| Sbjct 251382 GGGG--TAGCGGGC-CTGCAGCTGGTTGAGCTGGGTGAAGTCCCGCACGGTGGTGCCTCA 251438 Query 83500 GAGGGACGCTACGTTCTCGATGAGCAAGACCCGGCCCCGTAAG 83542 ||| || || |||||||||||||| | || |||||||| ||| Sbjct 251439 GAGCGATGCCACGTTCTCGATGAGGACCACACGGCCCCGGAAG 251481 Score = 118 bits (130), Expect = 1e-21 Identities = 221/312 (71%), Gaps = 16/312 (5%) Strand=Plus/Plus Query 83056 GAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGG-CA-GCGGTGGCTGTACCTG 83113 ||||||| || |||||||||||||| || || ||| || |||| ||||||| | Sbjct 250800 GAGCAGGCGCTGGATGTCGGGCTCCA--GCTGGGCGGTGGGCATGCGGGGGCTGTAGCGC 250857 Query 83114 CGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTG 83173 || | || ||| || | ||||||| |||||||||||||||||||| | ||| Sbjct 250858 CGGAAAGGTTCGCCCTCGGGGCCCACCAGGAACTTCTCGAAGTTCCAGGAGATGTCAGCC 250917 Query 83174 CGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCAT-GTCGTC 83232 || | ||| || ||| | | || | || || ||| ||| |||| | |||||| Sbjct 250918 CGCCGCACCGGGCTCCACACCACGAAGCGCGGCTCTGTCATGAG-GTGCACCGCGTCGTC 250976 Query 83233 GCTAGGCGCCGGCAGG---GCCTCTCGTAGGAAGGCGAAGAGCGGATG--TGCCCTTGCA 83287 | ||||| |||||| |||| || ||| ||||||||| || || || ||| || Sbjct 250977 GGCTGGCGCGGGCAGGTGTGCCT-TC--AGGTAGGCGAAGACAGGGTGGGTGTCCT-GC- 251031 Query 83288 CCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGG 83347 ||||| |||| |||||||| |||||| | ||||| ||||||||||| ||| || || Sbjct 251032 CCGTTCACCTGGCACTTCTGGAAGAGGGTGAAGTTGGGCTCGAAGCCACCCCCTGGGCGC 251091 Query 83348 ACGTGCTTCAGG 83359 |||| ||| ||| Sbjct 251092 ACGTACTTGAGG 251103 >seq9961 Length=233182 Score = 105 bits (116), Expect = 8e-18 Identities = 157/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 83143 GAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTG 83202 |||||||||||||||||||| | ||| || | || ||| || |||||| ||| ||| Sbjct 152228 GAACTTCTCGAAGTTCCAGGAGATGTCATTCCTGCGCACAGGGGACCAGATGATGTACTG 152287 Query 83203 GGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAA 83262 |||| ||| |||| | ||| || || ||||| |||||| | ||| Sbjct 152288 CGGGTTAGTCATCAGCGAGGAGGGGTCATCATGTGGGAAGGGCAGCGCCTCTTTCAAGAA 152347 Query 83263 GGCGAAGAGCGGATGTGC--CCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAG 83320 || |||||| || || || |||| | |||| || |||||||||||||| | | ||| Sbjct 152348 GGTGAAGAGTGGGTGGGCATCCTTCC--CGTTCACATCGCACTTCTCGAACAAGGTGAAG 152405 Query 83321 TTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGA 83361 || |||| | |||||||||| ||||| ||||| | ||| || Sbjct 152406 TTGGGCTTGTAGCCGTTCCCGGGACGAACGTGTTCCAGCGA 152446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 606309651993120