Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015
-06-23] 326,828 sequences; 1,595,295,449 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq212 96.9 3e-15
seq95 93.3 4e-14
>seq212
Length=4710727
Score = 96.9 bits (106), Expect = 3e-15
Identities = 94/121 (78%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 15908 AACACATTATCTTTTTTATTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTT 15967
|| ||||| || || | | || |||||| | | ||||||||| ||| | |||
Sbjct 4379791 AAAACATTGTCCATTGTTTCTGCCATAACAGCAAAACGTTGATATTCTGAAACCCGCTTC 4379850
Query 15968 TCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTT 16027
||||||||||||||||||||||| | |||||||| ||||| |||||||||||||||| |
Sbjct 4379851 TCAAAGAAATTTGTTTTTCCTTCCAGAGAAATATTCTCCATGAAATCAAAAGGATTTTCT 4379910
Query 16028 G 16028
|
Sbjct 4379911 G 4379911
Score = 89.7 bits (98), Expect = 5e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318
|| || || || || | || || || || || | || ||||| || || | || ||
Sbjct 4384858 TCATCTCTGCTAATAAGTTCATTAGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCTTC 4384917
Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378
| ||| |||||||| ||||| ||||| |||||||| || ||||||||||| ||||| |||
Sbjct 4384918 AGCCAGAATATAGCAGCAAAGGAACCCGAAAAGAAGATTCCTTCAACTGCAGCAAAGGCA 4384977
Query 16379 ACCAATCGCTCACC 16392
|||| | ||||||
Sbjct 4384978 ACCACCCTCTCACC 4384991
>seq95
Length=9561987
Score = 93.3 bits (102), Expect = 4e-14
Identities = 92/119 (77%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318
|| || ||||| || | || || ||||| || || || ||||||| ||||| ||| ||
Sbjct 3110865 TCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 3110806
Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGC 16377
| |||||| || | |||||||| ||||||||||| || ||||| ||||| ||||| ||
Sbjct 3110805 AGCCAAAAAATTGATGCAAATGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAGC 3110747
Score = 87.8 bits (96), Expect = 2e-12
Identities = 78/98 (80%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 15926 TTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTT 15985
|||||||| ||| ||| | |||||||||| |||| ||| |||||||| || |||||
Sbjct 3112190 TTTGACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAGTTGGTTTTG 3112131
Query 15986 CCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATT 16023
||||| | || || |||||||| || |||||||||||
Sbjct 3112130 CCTTCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 3112093
Score = 82.4 bits (90), Expect = 7e-11
Identities = 86/113 (76%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 16490 TCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTC 16549
||||| |||| ||| || || || ||||| | ||| |||||||||||||| |||||
Sbjct 3108670 TCTTTTGAATCTTTAATGTATGTGTCAATTAGAAGACTGTACATTTCTGAATGTATATTT 3108611
Query 16550 TCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602
||||| || ||||| || ||||| || || | ||||| | || ||||||||
Sbjct 3108610 TCCATGGCAATCTGGAAGCCATAGAAACAACGGGCTTCTGTGATCTGTACTTC 3108558
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 460622476600800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |