Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015 -06-23] 326,828 sequences; 1,595,295,449 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq63 423 1e-113 seq326825 116 3e-21 >seq63 Length=14936771 Score = 423 bits (468), Expect = 1e-113 Identities = 695/997 (70%), Gaps = 4/997 (0%) Strand=Plus/Minus Query 107628 TACCTCAACATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTTC 107687 ||||| ||| | || || ||||| ||||||||||| || |||||| ||||| Sbjct 4701498 TACCTGAACCTGACGAGGGACTGCAGCCGCTTCAAGGCGACGCGGCGGTTCATCGAGTTC 4701439 Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || ||||| | || ||| ||||||||||| |||||||| ||||| |||| || || Sbjct 4701438 CCGCTGAGCCAGGAGGAGGCCGACTTCCCCATCGCCTACTCCATGGTCATCCACGACAAA 4701379 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 || || | || || ||||| ||||| |||| || ||||| |||||| | ||||| || Sbjct 4701378 ATCGAGATGTTCGAGCGGCTCCTGCGGTCCGTCTACGCCCCCCAGAACCTCTACTGCATC 4701319 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 ||||| || ||||| |||| || ||| | ||||| || ||||| ||||| Sbjct 4701318 CACGTCGACCGCAAGTCGCCAGCCACCTTCCAGGAGGCCGTGCGAGCCATCGCCGCCTGC 4701259 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 |||||||| ||||| ||||||| ||| ||||| ||||||||||||||| | Sbjct 4701258 TTCCCCAACGTCTTTGTGGCCAGCCGCCTGGAGAACGTGGTCTATGCCTCCTGGTCCCGG 4701199 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTAC 107987 |||| |||||||||||||||||| | ||| ||||||||||| | ||||| ||| ||| Sbjct 4701198 CTGCAGGCTGACCTGAACTGTATGCAGGACCTGCTCCAGAGCCCTGTGCCCTGGCGCTAC 4701139 Query 107988 TTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCC 108047 | || || || || || || ||||||||||| |||||||| |||||||| |||| Sbjct 4701138 CTCCTCAACACCTGTGGCACCGACTTCCCCATCAAGACCAACGCCGAGATCGTCCGCAAT 4701079 Query 108048 CTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAG-GTACCTTCTGAGTCCaaaaa 108106 || ||| | || |||| ||||||| || ||||| ||| | ||| | || ||| Sbjct 4701078 CTGAAGGCGCTGCAGGGGCAGAACAGCATCGAGTCCGAGAGGCCCTCGTCTGT-CAAGCG 4701020 Query 108107 aaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGA-TGA 108165 | |||||| | |||| | | || |||||| | | | || | |||| | | || Sbjct 4701019 GGAGCGCTGGCAGTACCACCACGAAGTGACACAGTTCATCT-TCCGAACAGCTACACAGA 4700961 Query 108166 AGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTC 108225 | | || || || | | | |||||||||||||| ||||| || | |||||| | | Sbjct 4700960 AACAGCCGCCGCCGCACAGCTCCCCCATGTTCACAGGCAATGCGTACATCGTGGCCACGC 4700901 Query 108226 GAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCA 108285 | | ||| || | || |||| | | ||| | || | | || ||| || Sbjct 4700900 GGGGCTTCGTGGAGCACCTCTTCCAGAGCCCCACGGTGCAGCAGTTCTTCGAGTGGTCCA 4700841 Query 108286 AAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATGC 108345 | |||||||| |||||||| || ||| |||||||||| || | || || | ||| Sbjct 4700840 AGGACACCTACAGCCCCGAGGAGCACGTCTGGGCCACGCTCAACCGCATGCCTGGCGTGC 4700781 Query 108346 CTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGC 108405 | || |||| || | || ||||| | |||| ||||||| ||||| ||| | | Sbjct 4700780 CGGGGGCTGTGCCGCACAACAACAAGTTCGAGCTCTCGGACATGAACGCCATGGCCCGCC 4700721 Query 108406 TCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCT 108465 | |||||||||||||||| ||||| || ||||| ||| || || || | |||||| Sbjct 4700720 TGGTCAAGTGGCAGTACCTGGAGGGCGACACCAGCAAGGGCGCACCCTACCCGCCCTGCA 4700661 Query 108466 CTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCC 108525 | || | || | | | ||| ||||| | || || |||||||||||| |||||| |||| Sbjct 4700660 CCGGTGTGCACCAGCGCGCCGTCTGCGTCTATGGCGCCGGGGACCTGCCCTGGATGCTCC 4700601 Query 108526 AGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCAGT 108585 || | || || |||||||| |||||||| ||||| |||||| || || | | |||| Sbjct 4700600 AGCAGCACCATCTCTTGGCCAACAAGTTCGACCCCCTGGTGGACGAGGCCGCCATCCAGT 4700541 Query 108586 GCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGG 108622 || | || | | |||| || || | |||| |||| || Sbjct 4700540 GCCTCGAGGTGCACCTGCGCCACAGGGCCCTCTACGG 4700504 >seq326825 Length=37256661 Score = 116 bits (128), Expect = 3e-21 Identities = 219/320 (68%), Gaps = 4/320 (1%) Strand=Plus/Minus Query 107711 CTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCT 107770 ||||||| |||||||| ||| | ||| || || |||| | ||| || ||||| | Sbjct 13077773 CTTCCCCGTTGCCTACATCATGACCCTGCATAAGGAGTTTGAGACCTTCGAGCGGCTCTT 13077714 Query 107771 GCGAGCCGTGTA--TGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCA 107828 | || ||||| |||||| | ||| | ||||||||||||||||| |||| | ||| Sbjct 13077713 CAGGGCGGTGTACATGCCCC--AAAACGTCTACTGTGTCCACGTGGACCAGAAGGCACCA 13077656 Query 107829 GAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCC 107888 | | || || ||||||| || | | | |||||||||||| | ||| | ||| Sbjct 13077655 GCCGCCTTTAAGCAGGCGGTGCAGCGCCTGGTGGGCTGCTTCCCCAACGCTTTCCTCGCC 13077596 Query 107889 AGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGT 107948 ||| ||| | |||||| || | | | ||| | ||| || ||||| ||||| Sbjct 13077595 TCCAAGATGGAGCGGGTGGTCTACGGCGGCATATCCCGCCTGCGGGCCGACCTCAACTGC 13077536 Query 107949 ATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACA 108008 ||| |||| |||| | | ||||| ||||||||| | || || || |||||| Sbjct 13077535 ATGAGAGACCTGCTGGCCTCCGCCGTGCCCTGGAAGTACCTGCTCAACACCTGCGGGCAG 13077476 Query 108009 GACTTCCCCATAAAGACCAA 108028 ||||||||| | |||||||| Sbjct 13077475 GACTTCCCCTTGAAGACCAA 13077456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346881570056472