Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015 -06-23] 326,828 sequences; 1,595,295,449 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq511 122 7e-23 seq285 114 1e-20 >seq511 Length=1428375 Score = 122 bits (134), Expect = 7e-23 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| |||| | | || | |||||| ||| ||||||||| ||||||||||| Sbjct 1121409 GCCACCCCTCAGACGCAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 1121350 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 ||| ||| | || ||||| || || || || || |||| ||||| || || || || Sbjct 1121349 CAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGGGG 1121290 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | |||||||||||| || || ||| || | | | | |||| | ||| || Sbjct 1121289 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCGAC 1121230 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 ||| | ||| || |||||||| ||||| |||||||||||||| ||||||||| Sbjct 1121229 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTTG 1121178 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| |||| | | || | |||||| ||| ||||||||| |||||||||||| Sbjct 1121637 GCCACCCCTCAGACGCAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 1121578 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 ||| ||| | || ||||| || || || || || |||| ||||| || || || || Sbjct 1121577 CAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGGGG 1121518 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | |||||||||||| || || ||| || | | | | |||| | ||| || Sbjct 1121517 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCAAC 1121458 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||| | ||| || |||||||| |||| |||||||||||||| |||||| Sbjct 1121457 CTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATG 1121409 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| |||| | | || | |||||| ||| ||||||||| |||||||||||| Sbjct 1121865 GCCACCCCTCAGACGCAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 1121806 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 ||| ||| | || ||||| || || || || || |||| ||||| || || || || Sbjct 1121805 CAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGGGG 1121746 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | |||||||||||| || || ||| || | | | | |||| | ||| || Sbjct 1121745 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCAAC 1121686 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||| | ||| || |||||||| |||| |||||||||||||| |||||| Sbjct 1121685 CTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATG 1121637 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| |||| | | || | |||||| ||| ||||||||| |||||||||||| Sbjct 1122093 GCCACCCCTCAGACGCAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 1122034 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 ||| ||| | || ||||| || || || || || |||| ||||| || || || || Sbjct 1122033 CAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGGGG 1121974 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | |||||||||||| || || ||| || | | | | |||| | ||| || Sbjct 1121973 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCAAC 1121914 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||| | ||| || |||||||| |||| |||||||||||||| |||||| Sbjct 1121913 CTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATG 1121865 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| |||| | | || | |||||| ||| ||||||||| |||||||||||| Sbjct 1122321 GCCACCCCTCAGACGCAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 1122262 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 ||| ||| | || ||||| || || || || || |||| ||||| || || || || Sbjct 1122261 CAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGGGG 1122202 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | |||||||||||| || || ||| || | | | | |||| | ||| || Sbjct 1122201 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCAAC 1122142 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||| | ||| || |||||||| |||| |||||||||||||| |||||| Sbjct 1122141 CTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATG 1122093 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| |||| | | || | |||||| ||| ||||||||| |||||||||||| Sbjct 1122549 GCCACCCCTCAGACGCAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 1122490 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 ||| ||| | || ||||| || || || || || |||| ||||| || || || || Sbjct 1122489 CAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGGGG 1122430 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | |||||||||||| || || ||| || | | | | |||| | ||| || Sbjct 1122429 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCAAC 1122370 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||| | ||| || |||||||| |||| |||||||||||||| |||||| Sbjct 1122369 CTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATG 1122321 >seq285 Length=3013400 Score = 114 bits (126), Expect = 1e-20 Identities = 167/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| |||| | | || | |||||| ||| ||||||||| ||||||||||| Sbjct 2914833 GCCACCCCTCAGACGCAGCACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 2914774 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| | || ||||| || || || || || |||| || ||| || || ||||| Sbjct 2914773 GAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGAGG 2914714 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || |||||||| ||||| ||| || | | | | |||| | ||| || Sbjct 2914713 AATGCCTTCCTTGTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAAC 2914654 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCTC 45344 ||||| ||| || ||||| ||||||| |||||||||||||| ||||| || |||| Sbjct 2914653 CTCCAGGGTGATGGTCTTCCCCGTCAAGGTCTTCACAAAGATCTGCATTTTTCCTC 2914598 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| |||| | | || | |||||| ||| ||||||||| ||||||||||| Sbjct 2917778 GCCACCCCTCAGACGCAGCACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 2917719 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| | || ||||| || || || || || |||| || ||| || || ||||| Sbjct 2917718 GAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGAGG 2917659 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || |||||||| ||||| ||| || | | | | |||| | ||| || Sbjct 2917658 AATGCCTTCCTTGTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAAC 2917599 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| ||| || ||||| || ||||| |||||||||||||| ||||| Sbjct 2917598 CTCCAGGGTGATGGTCTTCCCTGTCAGGGTCTTCACAAAGATCTGCAT 2917551 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/209 (70%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| ||||| ||| |||||||| |||||||||||| || ||| | || |||| Sbjct 2917986 CAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGCCCATCTTCCA 2917927 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || || || || || |||| || ||| || || || || | || || ||||| | Sbjct 2917926 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCTTTGTCTTGGA 2917867 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | || ||| || | | | | |||| | ||| ||||||| ||| || ||||| | Sbjct 2917866 TCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTCC 2917807 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCATG 45337 | ||||| |||||||||||||| |||||| Sbjct 2917806 CTGTCAGGGTCTTCACAAAGATCTGCATG 2917778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 393501530043388