Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015 -06-23] 326,828 sequences; 1,595,295,449 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq95 134 1e-26 seq212 107 2e-18 >seq95 Length=9561987 Score = 134 bits (148), Expect = 1e-26 Identities = 110/134 (82%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || |||||||| || |||||||||||||| || | ||| ||||| ||||||| ||| || Sbjct 3110865 TCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 3110806 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | |||||| || | |||||||| ||||||||||| ||||| ||||| |||||||| ||| Sbjct 3110805 AGCCAAAAAATTGATGCAAATGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAGCT 3110746 Query 11774 ACTACTCTTTCTCC 11787 | ||| | |||||| Sbjct 3110745 ATTACACGTTCTCC 3110732 Score = 82.4 bits (90), Expect = 7e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 11900 TATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAAT 11959 ||||| || |||| | ||| |||||||||||||| ||||||||||| || || || || Sbjct 3108652 TATGTGTCAATTAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGCAATCTGGAAG 3108593 Query 11960 CCATAGAAACATCGTGCCTCTGAACACTGTACATC 11994 ||||||||||| || || |||| |||||| || Sbjct 3108592 CCATAGAAACAACGGGCTTCTGTGATCTGTACTTC 3108558 >seq212 Length=4710727 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || ||||||||||| || || ||||| ||||||| || | || || Sbjct 4384858 TCATCTCTGCTAATAAGTTCATTAGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCTTC 4384917 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| |||||||||||||| ||||| |||||||| ||||| || || || ||||| || Sbjct 4384918 AGCCAGAATATAGCAGCAAAGGAACCCGAAAAGAAGATTCCTTCAACTGCAGCAAAGGCA 4384977 Query 11774 ACTACTCTTTCTCC 11787 || || || || || Sbjct 4384978 ACCACCCTCTCACC 4384991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 466610712208320