Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015 -06-23] 326,828 sequences; 1,595,295,449 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq95 116 5e-21 seq326827 109 7e-19 seq319586 84.2 3e-11 seq3026 84.2 3e-11 >seq95 Length=9561987 Score = 116 bits (128), Expect = 5e-21 Identities = 100/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| |||||||| || | ||| || ||||| |||||||| ||||||| || | || | Sbjct 3110867 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 3110808 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | |||||||| || || |||||||| ||||||||||| |||||||| ||||| ||||| | Sbjct 3110807 TCAGCCAAAAAATTGATGCAAATGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 3110748 Query 36300 CAAT 36303 | || Sbjct 3110747 CTAT 3110744 Score = 96.9 bits (106), Expect = 5e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477 |||||||| ||||| ||||| | |||||| |||||||| ||||| || ||||| ||||| Sbjct 3108662 ATCTTTAATGTATGTGTCAATTAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGC 3108603 Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523 || || || || |||||||| | || || || |||||||||||| Sbjct 3108602 AATCTGGAAGCCATAGAAACAACGGGCTTCTGTGATCTGTACTTCT 3108557 >seq326827 Length=63182071 Score = 109 bits (120), Expect = 7e-19 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 9227 TTATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATC 9286 |||||| |||||| || | || | | | | ||| || ||||||||||||||||| || Sbjct 12509870 TTATTTTTTATTAAATGCCTCTAGTAAACGCAGCAGGTGTAAGAACAGATTGATGATGTC 12509929 Query 9287 CAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGA 9346 || ||| | |||||| | || | | || |||||||| || | || || || || | Sbjct 12509930 CAGGTAAAGATTGATTGCAGCCAGTAGGTACTCTTCAGGGGATAATTTGTGCATCAGCAA 12509989 Query 9347 GTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAG 9406 || |||||||| ||||| ||||| ||||| | ||| || ||| ||||| | |||| Sbjct 12509990 ATGAGTGTCATAAATAATAAATCCACAGAACAGAAGCGCTCCAGCAGCAGCAAACACCAA 12510049 Query 9407 CTCCACTGTTTCACT 9421 ||||| ||| ||||| Sbjct 12510050 CTCCATTGTCTCACT 12510064 Score = 100 bits (110), Expect = 4e-16 Identities = 99/128 (77%), Gaps = 4/128 (3%) Strand=Plus/Plus Query 9470 AACAAACA----ATCCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATG 9525 |||||||| | |||||||||| ||| ||||| |||||||||||||| | ||||||| Sbjct 12511142 AACAAACATCATACCCTGCTCCAAATTTGCTGAAGTCTCTCTTTGATTGCAAGGTATATG 12511201 Query 9526 CAGTCAGAGCAAGAAACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACAT 9585 ||||||| |||| || || |||||||| || || || ||||| | |||| || | Sbjct 12511202 CAGTCAGTCCAAGGAATACAGCAGTAGTAAGAATAAAGGCTTGGAAGACGATGGATACGT 12511261 Query 9586 CATAGAAA 9593 |||||||| Sbjct 12511262 CATAGAAA 12511269 >seq319586 Length=853 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| || | ||| || ||||||||||| | ||| || || || || || || || | | Sbjct 12 CACTGAACACTTTCTTAGTTTCTTTGTGCAAATTGGACACTGCAATCCTCGCTGCCAGGA 71 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 | || || || || |||| ||||| ||| || || |||| || |||||||| |||| Sbjct 72 TAGCGTAGTCAGGGTGTTTGGTAGTCAGAGTTGCAGCCGTTTCAGCAGCCAGAGTATCCA 131 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||| || || || || ||| | || | ||||| || || ||||| Sbjct 132 GTTCCACTGTCGTGACACCACTGTACAGCCCTTGAATCACTTTCAT 177 >seq3026 Length=70695 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| || | ||| || ||||||||||| | ||| || || || || || || || | | Sbjct 51076 CACTGAACACTTTCTTAGTTTCTTTGTGCAAATTGGACACTGCAATCCTCGCTGCCAGGA 51017 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 | || || || || |||| ||||| ||| || || |||| || |||||||| |||| Sbjct 51016 TAGCGTAGTCAGGGTGTTTGGTAGTCAGAGTTGCAGCCGTTTCAGCAGCCAGAGTATCCA 50957 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||| || || || || ||| | || | ||||| || || ||||| Sbjct 50956 GTTCCACTGTCGTGACACCACTGTACAGCCCTTGAATCACTTTCAT 50911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655483933751520