Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015
-06-23] 326,828 sequences; 1,595,295,449 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq95 116 5e-21
seq326827 109 7e-19
seq319586 84.2 3e-11
seq3026 84.2 3e-11
>seq95
Length=9561987
Score = 116 bits (128), Expect = 5e-21
Identities = 100/124 (81%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239
|||| |||||||| || | ||| || ||||| |||||||| ||||||| || | || |
Sbjct 3110867 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 3110808
Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299
| |||||||| || || |||||||| ||||||||||| |||||||| ||||| ||||| |
Sbjct 3110807 TCAGCCAAAAAATTGATGCAAATGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 3110748
Query 36300 CAAT 36303
| ||
Sbjct 3110747 CTAT 3110744
Score = 96.9 bits (106), Expect = 5e-15
Identities = 85/106 (80%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477
|||||||| ||||| ||||| | |||||| |||||||| ||||| || ||||| |||||
Sbjct 3108662 ATCTTTAATGTATGTGTCAATTAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGC 3108603
Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523
|| || || || |||||||| | || || || ||||||||||||
Sbjct 3108602 AATCTGGAAGCCATAGAAACAACGGGCTTCTGTGATCTGTACTTCT 3108557
>seq326827
Length=63182071
Score = 109 bits (120), Expect = 7e-19
Identities = 141/195 (72%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 9227 TTATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATC 9286
|||||| |||||| || | || | | | | ||| || ||||||||||||||||| ||
Sbjct 12509870 TTATTTTTTATTAAATGCCTCTAGTAAACGCAGCAGGTGTAAGAACAGATTGATGATGTC 12509929
Query 9287 CAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGA 9346
|| ||| | |||||| | || | | || |||||||| || | || || || || |
Sbjct 12509930 CAGGTAAAGATTGATTGCAGCCAGTAGGTACTCTTCAGGGGATAATTTGTGCATCAGCAA 12509989
Query 9347 GTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAG 9406
|| |||||||| ||||| ||||| ||||| | ||| || ||| ||||| | ||||
Sbjct 12509990 ATGAGTGTCATAAATAATAAATCCACAGAACAGAAGCGCTCCAGCAGCAGCAAACACCAA 12510049
Query 9407 CTCCACTGTTTCACT 9421
||||| ||| |||||
Sbjct 12510050 CTCCATTGTCTCACT 12510064
Score = 100 bits (110), Expect = 4e-16
Identities = 99/128 (77%), Gaps = 4/128 (3%)
Strand=Plus/Plus
Query 9470 AACAAACA----ATCCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATG 9525
|||||||| | |||||||||| ||| ||||| |||||||||||||| | |||||||
Sbjct 12511142 AACAAACATCATACCCTGCTCCAAATTTGCTGAAGTCTCTCTTTGATTGCAAGGTATATG 12511201
Query 9526 CAGTCAGAGCAAGAAACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACAT 9585
||||||| |||| || || |||||||| || || || ||||| | |||| || |
Sbjct 12511202 CAGTCAGTCCAAGGAATACAGCAGTAGTAAGAATAAAGGCTTGGAAGACGATGGATACGT 12511261
Query 9586 CATAGAAA 9593
||||||||
Sbjct 12511262 CATAGAAA 12511269
>seq319586
Length=853
Score = 84.2 bits (92), Expect = 3e-11
Identities = 118/166 (71%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858
|||| || | ||| || ||||||||||| | ||| || || || || || || || | |
Sbjct 12 CACTGAACACTTTCTTAGTTTCTTTGTGCAAATTGGACACTGCAATCCTCGCTGCCAGGA 71
Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918
| || || || || |||| ||||| ||| || || |||| || |||||||| ||||
Sbjct 72 TAGCGTAGTCAGGGTGTTTGGTAGTCAGAGTTGCAGCCGTTTCAGCAGCCAGAGTATCCA 131
Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964
||| || || || || ||| | || | ||||| || || |||||
Sbjct 132 GTTCCACTGTCGTGACACCACTGTACAGCCCTTGAATCACTTTCAT 177
>seq3026
Length=70695
Score = 84.2 bits (92), Expect = 3e-11
Identities = 118/166 (71%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858
|||| || | ||| || ||||||||||| | ||| || || || || || || || | |
Sbjct 51076 CACTGAACACTTTCTTAGTTTCTTTGTGCAAATTGGACACTGCAATCCTCGCTGCCAGGA 51017
Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918
| || || || || |||| ||||| ||| || || |||| || |||||||| ||||
Sbjct 51016 TAGCGTAGTCAGGGTGTTTGGTAGTCAGAGTTGCAGCCGTTTCAGCAGCCAGAGTATCCA 50957
Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964
||| || || || || ||| | || | ||||| || || |||||
Sbjct 50956 GTTCCACTGTCGTGACACCACTGTACAGCCCTTGAATCACTTTCAT 50911
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 655483933751520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |