Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015
-06-23] 326,828 sequences; 1,595,295,449 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq95 123 4e-23
seq212 120 4e-22
seq3026 84.2 3e-11
>seq95
Length=9561987
Score = 123 bits (136), Expect = 4e-23
Identities = 100/121 (83%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041
|||| |||||||| || ||||| || ||||| |||||||| ||||||| || | || |
Sbjct 3110867 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 3110808
Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101
| |||||||| || || |||||||| |||||||||||||||||||| ||||| ||||| |
Sbjct 3110807 TCAGCCAAAAAATTGATGCAAATGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 3110748
Query 50102 C 50102
|
Sbjct 3110747 C 3110747
>seq212
Length=4710727
Score = 120 bits (132), Expect = 4e-22
Identities = 108/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041
|||| ||||| ||||| ||||| || || || || | ||| ||||| ||||| | ||| |
Sbjct 4384856 CCTCATCTCTGCTAATAAGTTCATTAGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 4384915
Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101
| ||||| ||||| | ||||| || || ||||||||||||||||| ||||| |||||||
Sbjct 4384916 TCAGCCAGAATATAGCAGCAAAGGAACCCGAAAAGAAGATTCCTTCAACTGCAGCAAAGG 4384975
Query 50102 CAACAAGTCTCTCTCC 50117
|||| | ||||| ||
Sbjct 4384976 CAACCACCCTCTCACC 4384991
>seq3026
Length=70695
Score = 84.2 bits (92), Expect = 3e-11
Identities = 101/135 (75%), Gaps = 2/135 (1%)
Strand=Plus/Minus
Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998
||||| ||||| ||||||||||| ||||| || || | || || ||||||| || |||
Sbjct 55506 ACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGC 55447
Query 79999 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 80057
|| || || || |||||||| |||||| || || || | | ||| || ||||||| ||
Sbjct 55446 TCTTCTTTCCCAGTATTCTTCTTTAAG-TCAAGAAATTCGAAAATGTCCAAATGCCATGG 55388
Query 80058 TTCCAAGTATATGGC 80072
|| | || |||||
Sbjct 55387 CTCGAGATAGATGGC 55373
Score = 84.2 bits (92), Expect = 3e-11
Identities = 102/139 (73%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 79059 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCAC 79118
||| ||||| ||||| || | |||| || ||||| || |||||||| || || || |
Sbjct 61408 TACCTGAAACTCTCCCGAGAGGACTCGGCGTGTGTAGATGTTACTGGTGTAGGGCTCAAT 61349
Query 79119 CGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAA 79178
||||||||||| |||| || |||||||| || || |||||||| || | | | |
Sbjct 61348 GGATTCATTATTGCCCAGGATCTGAGCAGTAGAAGCAGTTGGCATTGGAGAAAGGAGAAG 61289
Query 79179 ACTATTTCTAAGACCGTAT 79197
|| ||||| | |||||||
Sbjct 61288 GCTGTTTCTGACACCGTAT 61270
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 715334420557920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |