Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015
-06-23] 326,828 sequences; 1,595,295,449 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq371 154 3e-32
seq285 136 9e-27
seq266184 125 2e-23
seq212 120 7e-22
seq95 102 2e-16
SEQ53839 87.8 4e-12
>seq371
Length=20460901
Score = 154 bits (170), Expect = 3e-32
Identities = 132/163 (81%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547
|| ||||||||||||||| |||| |||||||| |||||| | ||||| | || ||||||
Sbjct 849274 GCTTTATGGTGGTATTATGTCTCCAAAGGAATTGAATACTTGGATACAGTATTTTTCATC 849215
Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607
|| | ||||||||||| ||||||||||| || ||||| ||||| ||||| || |||||
Sbjct 849214 CTGAGGAAGAAATTTAACCAAATTAGTTTCCTTCATGTCTATCACCATTTCACCATGTTC 849155
Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650
|| | | ||||| |||||||| ||| | ||||| |||||||
Sbjct 849154 ACCCTCTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACAAG 849112
>seq285
Length=3013400
Score = 136 bits (150), Expect = 9e-27
Identities = 170/233 (73%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || || || || | || || || || | || || || ||||| || || ||||||
Sbjct 2914835 ATGCCACCCCTCAGACGCAGCACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCA 2914776
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| || || | || ||||| || || || |||||||| || |||||||| ||||| |||
Sbjct 2914775 GAGAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGA 2914716
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || ||||| || || || || || || || ||||| || | ||| || || || ||
Sbjct 2914715 GGAATGCCTTCCTTGTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCA 2914656
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562
||||| || || || ||||| || || | || || ||||| |||||||||||
Sbjct 2914655 ACCTCCAGGGTGATGGTCTTCCCCGTCAAGGTCTTCACAAAGATCTGCATTTT 2914603
>seq266184
Length=251
Score = 125 bits (138), Expect = 2e-23
Identities = 141/189 (75%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 104375 TGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGC 104434
|| || || |||||||| | |||||||||||||| | ||| || |||||||| || |
Sbjct 1 TGGATGTTGTAGTCAGACAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAAT 60
Query 104435 CTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACG 104494
|| ||||| ||||| || || ||||| || || |||||||||| || ||||| || |
Sbjct 61 CTTTGTTGGTCAGGTGGGATACCTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATA 120
Query 104495 GTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATC 104554
|| || || ||| || || || |||||||||||||| || | || || || || ||
Sbjct 121 GTGTCAGAAGATTCAACTTCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATT 180
Query 104555 TGCATTTTG 104563
||||| |||
Sbjct 181 TGCATCTTG 189
>seq212
Length=4710727
Score = 120 bits (132), Expect = 7e-22
Identities = 107/134 (80%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185
|| || ||| | ||||| ||||| || || ||||| || ||||||||||| || |||||
Sbjct 4384991 GGTGAGAGGGTGGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTTCGGGTTCCTTTGCT 4384932
Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245
||||| || ||| ||||||| || ||||| ||||| ||||| ||||||||||| ||| |
Sbjct 4384931 GCTATATTCTGGCTGAAGAAGAGGGGCCTGATGCCTGGATTGACTTTCTCTAATGAACTT 4384872
Query 269246 ATAAGCAGGGACGA 269259
|| ||||| || ||
Sbjct 4384871 ATTAGCAGAGATGA 4384858
>seq95
Length=9561987
Score = 102 bits (112), Expect = 2e-16
Identities = 96/121 (79%), Gaps = 1/121 (1%)
Strand=Plus/Plus
Query 268897 TCTAG-TAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGAT 268955
||||| | ||| |||| ||||||| |||||||| | |||||| | ||||| || || |
Sbjct 3108535 TCTAGGTGGAGCGGTTCAGTCAAGAAGTACAGATCACAGAAGCCCGTTGTTTCTATGGCT 3108594
Query 268956 TCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATA 269015
||||||| || || |||||||| |||||||| ||||||||||| |||| || || || |
Sbjct 3108595 TCCAGATTGCCATGGAAAATATACATTCAGAAATGTACAGTCTTCTAATTGACACATACA 3108654
Query 269016 T 269016
|
Sbjct 3108655 T 3108655
Score = 98.7 bits (108), Expect = 2e-15
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185
|||||| | || | |||||||| || || ||||| || |||||||| || || |||||
Sbjct 3110732 GGAGAACGTGTAATAGCTTTTGCAGCAGTGGAAGGAATCTTCTTTTCTGGCTCATTTGCA 3110791
Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245
| || |||||| ||||||||||||| | ||||| ||| | ||||| ||||| ||| |
Sbjct 3110792 TCAATTTTTTGGCTGAAGAAAAGAGGATTAATGCCTGGACTCACTTTTTCTAATGAACTC 3110851
Query 269246 ATAAGCAGGGACGA 269259
|| || || || ||
Sbjct 3110852 ATCAGTAGAGATGA 3110865
>SEQ53839
Length=101
Score = 87.8 bits (96), Expect = 4e-12
Identities = 69/83 (83%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || ||||||||||| || || |||||||| || || || |||||||| || || |||
Sbjct 85 ATACCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCA 26
Query 104390 GATAGAGTTCTACCGTCTTCTAG 104412
|| || |||||||||||||||||
Sbjct 25 GACAGCGTTCTACCGTCTTCTAG 3
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1146576937910224
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |