Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015 -06-23] 326,828 sequences; 1,595,295,449 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq189 161 1e-34 seq669 113 6e-20 >seq189 Length=739144 Score = 161 bits (178), Expect = 1e-34 Identities = 227/319 (71%), Gaps = 5/319 (2%) Strand=Plus/Minus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 |||| || | || ||||| ||||| || ||| | |||| || ||||| | ||| Sbjct 479000 GGAAGGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGGAAGGAGGCAG 478941 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 | |||| || |||| ||||| | ||| ||||| |||||||| |||||||| | |||| Sbjct 478940 TATTGATTATTTCAAAGCCCACTTTTCCTCCGAAAGTGCTGGGCTTCCAGTACTCGGGGG 478881 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 ||||||| |||| |||| || ||||| ||||| || || || || | || | || Sbjct 478880 AGCAGATAGCGTTTCCCATCAGTCCTTTCAGGGAGAATGGCGCTCCAATTTCTACCATCG 478821 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | || || ||||||||| || || ||||| || || | || || | |||| ||||| Sbjct 478820 TTTCGCCAAAGATGGCGCCTGGTCGCGGCTTCTCTACGAGGAGGCCTGGATACAGCTCCA 478761 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT-- 8976 ||| || |||||||| ||||| | ||||| || || ||||| ||||||||||| Sbjct 478760 TAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCTGCTGCCATTTCTTTTTCTCCTGTAA 478701 Query 8977 ---TTTATTAATAAAAATA 8992 || || |||||||||| Sbjct 478700 TTATTGATGAATAAAAATA 478682 Score = 149 bits (164), Expect = 9e-31 Identities = 178/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||||| ||| ||||| |||||| | |||||| |||||| ||||| || ||||||| Sbjct 477043 ATGAGTCTAGTAGTCTGGAACAGTCGCTCGTCATCCCATTCCGGATGCTCCTGTTTCAGG 476984 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 | || || |||| |||||||| |||||||| || ||||| |||||||| | ||| || Sbjct 476983 ATGTCACAGACTCGATTGTGTTCTCTGAGCCATATTGTAGCATACATCATTAAACCTGGG 476924 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 |||| ||||| |||| || || |||| | ||| | || || || | ||||| Sbjct 476923 ACCAAACCAAACACCTCCTGCCCAACAGAGAACTGCAGGTGCTCAGGAACGTGAGGAGGG 476864 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 || | ||| | ||||| || || || | ||| ||||||||||| |||||||| ||| Sbjct 476863 TACAACATCTCTGCCTGGGTGTCCTTCACTGTGGGTGGATACATTTCCCCGTCAATCATC 476804 Query 9862 TG 9863 || Sbjct 476803 TG 476802 Score = 109 bits (120), Expect = 8e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 9664 GGATGTTCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCG 9723 ||||| || ||||||| | || || |||| |||||||| |||||||| || ||||| Sbjct 468529 GGATGCTCCTGTTTCAGGATGTCACAGACTCGATTGTGTTCTCTGAGCCATATTGTAGCA 468470 Query 9724 TACATCATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTT 9783 |||||||| | ||| || |||| ||||| |||| || || |||| | ||| | Sbjct 468469 TACATCATTAAACCTGGGACCAAACCAAACACCTCCTGCCCAACAGAGAACTGCAGGTGC 468410 Query 9784 TCGGGCACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATAC 9843 || || || | ||||| || | ||| | ||||| || || || | ||| |||||| Sbjct 468409 TCAGGAACGTGAGGAGGGTACAACATCTCTGCCTGGGTGTCCTTCACTGTGGGTGGATAC 468350 Query 9844 ATTTCACCGTCAATAATCTG 9863 ||||| |||||||| ||||| Sbjct 468349 ATTTCCCCGTCAATCATCTG 468330 Score = 91.5 bits (100), Expect = 2e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 10289 ACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 10348 |||||| || || | || ||||| || || || || || || || | |||| ||| Sbjct 457698 ACCTTTAACACCCATTGGTGTTGGGCAGTCATGTCCTACTGGTGGCAGGCTTCTTGTGTA 457639 Query 10349 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATGGG 10408 ||||||||||||||| | |||||||||||| ||| | ||||| |||||| | || Sbjct 457638 ATAGGAGAGATTGGAATAGGCTTCCCAGCTTTTGTAGTTATAGTCACTGTTGTAAGTTGG 457579 Query 10409 AGGGCTGTCAATCAAATCGGATCTACCTGAACAAGCAAAA 10448 ||||||||||||| || ||||| ||| | || |||| Sbjct 457578 TGGGCTGTCAATCAGATGTGATCTTGCTGGAAAAAAAAAA 457539 Score = 91.5 bits (100), Expect = 2e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 10289 ACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 10348 |||||| || || | || ||||| || || || || || || || | |||| ||| Sbjct 466643 ACCTTTAACACCCATTGGTGTTGGGCAGTCATGTCCTACTGGTGGCAGGCTTCTTGTGTA 466584 Query 10349 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATGGG 10408 ||||||||||||||| | |||||||||||| ||| | ||||| |||||| | || Sbjct 466583 ATAGGAGAGATTGGAATAGGCTTCCCAGCTTTTGTAGTTATAGTCACTGTTGTAAGTTGG 466524 Query 10409 AGGGCTGTCAATCAAATCGGATCTACCTGAACAAGCAAAA 10448 ||||||||||||| || ||||| ||| | || |||| Sbjct 466523 TGGGCTGTCAATCAGATGTGATCTTGCTGGAAAAAAAAAA 466484 Score = 91.5 bits (100), Expect = 2e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 10289 ACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 10348 |||||| || || | || ||||| || || || || || || || | |||| ||| Sbjct 475115 ACCTTTAACACCCATTGGTGTTGGGCAGTCATGTCCTACTGGTGGCAGGCTTCTTGTGTA 475056 Query 10349 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATGGG 10408 ||||||||||||||| | |||||||||||| ||| | ||||| |||||| | || Sbjct 475055 ATAGGAGAGATTGGAATAGGCTTCCCAGCTTTTGTAGTTATAGTCACTGTTGTAAGTTGG 474996 Query 10409 AGGGCTGTCAATCAAATCGGATCTACCTGAACAAGCAAAA 10448 ||||||||||||| || ||||| ||| | || |||| Sbjct 474995 TGGGCTGTCAATCAGATGTGATCTTGCTGGAAAAAAAAAA 474956 >seq669 Length=1422838 Score = 113 bits (124), Expect = 6e-20 Identities = 146/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 ||||||| ||| |||| || ||||||| || ||||||||||||||||| | |||| Sbjct 421583 TCTTGACTATCTCAAAGCCAGTTGCTCCGCCAAACGTGCTGGGTTTCCAGTACTCGGGGG 421524 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| ||| | | || || || |||||||||||||| || | ||| | |||| Sbjct 421523 AGCAGATGGGGTTTCCGAGAAGCCCCTTCAGGGAAAACGGAGCTCCAATCTCCACCATGC 421464 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | || || || | | | ||| |||| || || | || || || ||| ||||||| Sbjct 421463 TTTCCCCAAAAAGTGAATCGGGCTGGGGTTTCTCAAGCAGCAAGCCCACGTAAAACTCCA 421404 Query 8919 CAGCCTCGATGTCTCCGTAAAG 8940 || ||||||||||| || || Sbjct 421403 GGGCATCGATGTCTCCATACAG 421382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 705630228208320