Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015
-06-23] 326,828 sequences; 1,595,295,449 total letters
Query= NC_006150.1
Length=221454
Score E
Sequences producing significant alignments: (Bits) Value
seq189 161 1e-34
seq669 113 6e-20
>seq189
Length=739144
Score = 161 bits (178), Expect = 1e-34
Identities = 227/319 (71%), Gaps = 5/319 (2%)
Strand=Plus/Minus
Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738
|||| || | || ||||| ||||| || ||| | |||| || ||||| | |||
Sbjct 479000 GGAAGGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGGAAGGAGGCAG 478941
Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798
| |||| || |||| ||||| | ||| ||||| |||||||| |||||||| | ||||
Sbjct 478940 TATTGATTATTTCAAAGCCCACTTTTCCTCCGAAAGTGCTGGGCTTCCAGTACTCGGGGG 478881
Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858
||||||| |||| |||| || ||||| ||||| || || || || | || | ||
Sbjct 478880 AGCAGATAGCGTTTCCCATCAGTCCTTTCAGGGAGAATGGCGCTCCAATTTCTACCATCG 478821
Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918
| || || ||||||||| || || ||||| || || | || || | |||| |||||
Sbjct 478820 TTTCGCCAAAGATGGCGCCTGGTCGCGGCTTCTCTACGAGGAGGCCTGGATACAGCTCCA 478761
Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT-- 8976
||| || |||||||| ||||| | ||||| || || ||||| |||||||||||
Sbjct 478760 TAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCTGCTGCCATTTCTTTTTCTCCTGTAA 478701
Query 8977 ---TTTATTAATAAAAATA 8992
|| || ||||||||||
Sbjct 478700 TTATTGATGAATAAAAATA 478682
Score = 149 bits (164), Expect = 9e-31
Identities = 178/242 (74%), Gaps = 0/242 (0%)
Strand=Plus/Minus
Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681
||||||| ||| ||||| |||||| | |||||| |||||| ||||| || |||||||
Sbjct 477043 ATGAGTCTAGTAGTCTGGAACAGTCGCTCGTCATCCCATTCCGGATGCTCCTGTTTCAGG 476984
Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741
| || || |||| |||||||| |||||||| || ||||| |||||||| | ||| ||
Sbjct 476983 ATGTCACAGACTCGATTGTGTTCTCTGAGCCATATTGTAGCATACATCATTAAACCTGGG 476924
Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801
|||| ||||| |||| || || |||| | ||| | || || || | |||||
Sbjct 476923 ACCAAACCAAACACCTCCTGCCCAACAGAGAACTGCAGGTGCTCAGGAACGTGAGGAGGG 476864
Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861
|| | ||| | ||||| || || || | ||| ||||||||||| |||||||| |||
Sbjct 476863 TACAACATCTCTGCCTGGGTGTCCTTCACTGTGGGTGGATACATTTCCCCGTCAATCATC 476804
Query 9862 TG 9863
||
Sbjct 476803 TG 476802
Score = 109 bits (120), Expect = 8e-19
Identities = 144/200 (72%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 9664 GGATGTTCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCG 9723
||||| || ||||||| | || || |||| |||||||| |||||||| || |||||
Sbjct 468529 GGATGCTCCTGTTTCAGGATGTCACAGACTCGATTGTGTTCTCTGAGCCATATTGTAGCA 468470
Query 9724 TACATCATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTT 9783
|||||||| | ||| || |||| ||||| |||| || || |||| | ||| |
Sbjct 468469 TACATCATTAAACCTGGGACCAAACCAAACACCTCCTGCCCAACAGAGAACTGCAGGTGC 468410
Query 9784 TCGGGCACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATAC 9843
|| || || | ||||| || | ||| | ||||| || || || | ||| ||||||
Sbjct 468409 TCAGGAACGTGAGGAGGGTACAACATCTCTGCCTGGGTGTCCTTCACTGTGGGTGGATAC 468350
Query 9844 ATTTCACCGTCAATAATCTG 9863
||||| |||||||| |||||
Sbjct 468349 ATTTCCCCGTCAATCATCTG 468330
Score = 91.5 bits (100), Expect = 2e-13
Identities = 116/160 (73%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 10289 ACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 10348
|||||| || || | || ||||| || || || || || || || | |||| |||
Sbjct 457698 ACCTTTAACACCCATTGGTGTTGGGCAGTCATGTCCTACTGGTGGCAGGCTTCTTGTGTA 457639
Query 10349 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATGGG 10408
||||||||||||||| | |||||||||||| ||| | ||||| |||||| | ||
Sbjct 457638 ATAGGAGAGATTGGAATAGGCTTCCCAGCTTTTGTAGTTATAGTCACTGTTGTAAGTTGG 457579
Query 10409 AGGGCTGTCAATCAAATCGGATCTACCTGAACAAGCAAAA 10448
||||||||||||| || ||||| ||| | || ||||
Sbjct 457578 TGGGCTGTCAATCAGATGTGATCTTGCTGGAAAAAAAAAA 457539
Score = 91.5 bits (100), Expect = 2e-13
Identities = 116/160 (73%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 10289 ACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 10348
|||||| || || | || ||||| || || || || || || || | |||| |||
Sbjct 466643 ACCTTTAACACCCATTGGTGTTGGGCAGTCATGTCCTACTGGTGGCAGGCTTCTTGTGTA 466584
Query 10349 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATGGG 10408
||||||||||||||| | |||||||||||| ||| | ||||| |||||| | ||
Sbjct 466583 ATAGGAGAGATTGGAATAGGCTTCCCAGCTTTTGTAGTTATAGTCACTGTTGTAAGTTGG 466524
Query 10409 AGGGCTGTCAATCAAATCGGATCTACCTGAACAAGCAAAA 10448
||||||||||||| || ||||| ||| | || ||||
Sbjct 466523 TGGGCTGTCAATCAGATGTGATCTTGCTGGAAAAAAAAAA 466484
Score = 91.5 bits (100), Expect = 2e-13
Identities = 116/160 (73%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 10289 ACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 10348
|||||| || || | || ||||| || || || || || || || | |||| |||
Sbjct 475115 ACCTTTAACACCCATTGGTGTTGGGCAGTCATGTCCTACTGGTGGCAGGCTTCTTGTGTA 475056
Query 10349 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATGGG 10408
||||||||||||||| | |||||||||||| ||| | ||||| |||||| | ||
Sbjct 475055 ATAGGAGAGATTGGAATAGGCTTCCCAGCTTTTGTAGTTATAGTCACTGTTGTAAGTTGG 474996
Query 10409 AGGGCTGTCAATCAAATCGGATCTACCTGAACAAGCAAAA 10448
||||||||||||| || ||||| ||| | || ||||
Sbjct 474995 TGGGCTGTCAATCAGATGTGATCTTGCTGGAAAAAAAAAA 474956
>seq669
Length=1422838
Score = 113 bits (124), Expect = 6e-20
Identities = 146/202 (72%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798
||||||| ||| |||| || ||||||| || ||||||||||||||||| | ||||
Sbjct 421583 TCTTGACTATCTCAAAGCCAGTTGCTCCGCCAAACGTGCTGGGTTTCCAGTACTCGGGGG 421524
Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858
|||||||| ||| | | || || || |||||||||||||| || | ||| | ||||
Sbjct 421523 AGCAGATGGGGTTTCCGAGAAGCCCCTTCAGGGAAAACGGAGCTCCAATCTCCACCATGC 421464
Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918
| || || || | | | ||| |||| || || | || || || ||| |||||||
Sbjct 421463 TTTCCCCAAAAAGTGAATCGGGCTGGGGTTTCTCAAGCAGCAAGCCCACGTAAAACTCCA 421404
Query 8919 CAGCCTCGATGTCTCCGTAAAG 8940
|| ||||||||||| || ||
Sbjct 421403 GGGCATCGATGTCTCCATACAG 421382
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 705630228208320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |