Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015 -06-23] 326,828 sequences; 1,595,295,449 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq326827 156 7e-34 seq244744 96.9 5e-16 >seq326827 Length=63182071 Score = 156 bits (172), Expect = 7e-34 Identities = 191/261 (73%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||||||||| || || || |||||||| || ||||||||||| || || Sbjct 29832685 CGCTAAGCGTCATCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 29832626 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| || || || || ||||| |||| || | |||| ||||||| Sbjct 29832625 CCGGCGTCTGGCTCGGCGCGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAAGAGAC 29832566 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| ||| |||| |||||| || ||| || || Sbjct 29832565 GCGCGGCGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGTGATGCCGTCACCTACACGGA 29832506 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| ||||||| | || || || |||| || || || Sbjct 29832505 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTGTACGCCCTGAAGCGCCAGGG 29832446 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | || || ||||| Sbjct 29832445 ACGCACTCTCTACGGCTTTGG 29832425 Score = 150 bits (166), Expect = 3e-32 Identities = 190/261 (73%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||||||||| || || || |||||||| || ||||||||||| || || Sbjct 29819637 CGCTAAGCGTCATCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 29819696 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || || || ||||| |||| || | |||| ||||||| Sbjct 29819697 CCGGCGCCTGGCTCGGCGCGGCGGCGTGAAGCGCATCTCGGGCCTCATCTACGAAGAGAC 29819756 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| ||| |||| |||||| || ||| || || Sbjct 29819757 GCGCGGCGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGTGATGCCGTCACCTACACGGA 29819816 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| ||||||| | || || || |||| || || || Sbjct 29819817 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTGTACGCCCTGAAGCGCCAGGG 29819876 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | || || ||||| Sbjct 29819877 ACGCACTCTCTACGGCTTTGG 29819897 Score = 149 bits (164), Expect = 1e-31 Identities = 189/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| || |||| || || || |||||||| || ||||||||||| || ||| Sbjct 29859106 GCTAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCATC 29859047 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||||||||| || || || || ||||| |||| || | |||| ||||||| Sbjct 29859046 CGGCGTCTGGCTCGGCGCGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAAGAGACG 29858987 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| | ||||| ||| ||| |||| ||||||| || ||| || ||| Sbjct 29858986 CGCGGCGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGTGATGCTGTCACCTACACGGAG 29858927 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| ||||| ||||||| | || || || |||| || || || Sbjct 29858926 CACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTGTACGCCCTGAAGCGCCAGGGA 29858867 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | | || || ||||| Sbjct 29858866 CGCACTCTCTACGGCTTTGG 29858847 Score = 147 bits (162), Expect = 3e-31 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||||||||| || || || |||||||| || ||||||||||| || || Sbjct 29833042 CGCTAAGCGTCATCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 29832983 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| || || || || ||||| |||| || | |||| ||||||| Sbjct 29832982 CCGGCGTCTGGCTCGGCGCGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAAGAGAC 29832923 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| ||| |||| ||||||| || ||| || || Sbjct 29832922 GCGCGGCGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGTGATGCTGTCACCTACACGGA 29832863 Query 16612 GCACGCTAAACGTAAGACTGTCAC 16635 |||||| || || ||||| ||||| Sbjct 29832862 GCACGCCAAGCGCAAGACGGTCAC 29832839 Score = 145 bits (160), Expect = 1e-30 Identities = 188/260 (72%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| ||||||| || || || |||||||| || ||||||||||| || ||| Sbjct 29792311 GCTAAGCGCCATCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCATC 29792252 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || |||||||| || || || || ||||| |||| || | |||| ||||||| Sbjct 29792251 CGGCGCCTGGCTCGGCGCGGCGGCGTGAAGCGCATCTCGGGCCTCATCTACGAAGAGACG 29792192 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| | ||||| ||| ||| |||| |||||| || ||| || ||| Sbjct 29792191 CGCGGCGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGTGATGCCGTCACCTACACGGAG 29792132 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| ||||| ||||||| | || || || |||| || || || Sbjct 29792131 CACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTGTACGCCCTGAAGCGCCAGGGA 29792072 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | | || ||||| || Sbjct 29792071 CGCACTCTCTACGGTTTCGG 29792052 Score = 109 bits (120), Expect = 9e-20 Identities = 123/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| ||||||| || || || |||||||| || ||||||||||| || || Sbjct 29752272 CGCTAAGCGCCATCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 29752213 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || || || ||||| |||| || | |||| ||||||| Sbjct 29752212 CCGGCGCCTGGCTCGGCGCGGCGGCGTGAAGCGCATCTCGGGCCTCATCTACGAAGAGAC 29752153 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGC 16596 || | || ||||| | ||||| ||| ||| |||| |||||| Sbjct 29752152 GCGCGGCGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGTGATGC 29752108 >seq244744 Length=209 Score = 96.9 bits (106), Expect = 5e-16 Identities = 141/198 (71%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 16448 AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGT 16507 |||| ||| |||||||||||||||| || || |||||||||||| | | | ||| | Sbjct 202 AGAT-TCTAAGAGATAACATCCAAGGTATTACTAAGCCAGCTATCAGAAGATTAGCTAGA 144 Query 16508 CGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAG 16567 | ||||| ||||||||| | ||||| ||| |||| ||||| | | | ||| ||||| Sbjct 143 AGAGGTGGTGTCAAGCGTATTTCTGGTTTGATCTACGAAGAAGTCAGAGCTGTCTTGAAA 84 Query 16568 ATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAG 16627 |||| | | |||| ||| || || | ||| ||||| ||||| || | ||| Sbjct 83 TCCTTCTTGGAATCCGTCATCAGAGACTCTGTTACCTACACCGAACACGCCAAGAGAAAG 24 Query 16628 ACTGTCACCTCCATGGAT 16645 ||||| || || ||||| Sbjct 23 ACTGTTACTTCTTTGGAT 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78776378871804