Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015
-06-23] 326,828 sequences; 1,595,295,449 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq326827 156 7e-34
seq244744 96.9 5e-16
>seq326827
Length=63182071
Score = 156 bits (172), Expect = 7e-34
Identities = 191/261 (73%), Gaps = 0/261 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||||||||||||||||| || || || |||||||| || ||||||||||| || ||
Sbjct 29832685 CGCTAAGCGTCATCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 29832626
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| ||||||||||| || || || || ||||| |||| || | |||| |||||||
Sbjct 29832625 CCGGCGTCTGGCTCGGCGCGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAAGAGAC 29832566
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || ||||| | ||||| ||| ||| |||| |||||| || ||| || ||
Sbjct 29832565 GCGCGGCGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGTGATGCCGTCACCTACACGGA 29832506
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| ||||| ||||||| | || || || |||| || || ||
Sbjct 29832505 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTGTACGCCCTGAAGCGCCAGGG 29832446
Query 16672 CCGTAAGATTTATGGTTTTGG 16692
|| | | || || |||||
Sbjct 29832445 ACGCACTCTCTACGGCTTTGG 29832425
Score = 150 bits (166), Expect = 3e-32
Identities = 190/261 (73%), Gaps = 0/261 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||||||||||||||||| || || || |||||||| || ||||||||||| || ||
Sbjct 29819637 CGCTAAGCGTCATCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 29819696
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || |||||||| || || || || ||||| |||| || | |||| |||||||
Sbjct 29819697 CCGGCGCCTGGCTCGGCGCGGCGGCGTGAAGCGCATCTCGGGCCTCATCTACGAAGAGAC 29819756
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || ||||| | ||||| ||| ||| |||| |||||| || ||| || ||
Sbjct 29819757 GCGCGGCGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGTGATGCCGTCACCTACACGGA 29819816
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| ||||| ||||||| | || || || |||| || || ||
Sbjct 29819817 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTGTACGCCCTGAAGCGCCAGGG 29819876
Query 16672 CCGTAAGATTTATGGTTTTGG 16692
|| | | || || |||||
Sbjct 29819877 ACGCACTCTCTACGGCTTTGG 29819897
Score = 149 bits (164), Expect = 1e-31
Identities = 189/260 (73%), Gaps = 0/260 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|||||||| || |||| || || || |||||||| || ||||||||||| || |||
Sbjct 29859106 GCTAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCATC 29859047
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| ||||||||||| || || || || ||||| |||| || | |||| |||||||
Sbjct 29859046 CGGCGTCTGGCTCGGCGCGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAAGAGACG 29858987
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| | || ||||| | ||||| ||| ||| |||| ||||||| || ||| || |||
Sbjct 29858986 CGCGGCGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGTGATGCTGTCACCTACACGGAG 29858927
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
||||| || || ||||| ||||| ||||||| | || || || |||| || || ||
Sbjct 29858926 CACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTGTACGCCCTGAAGCGCCAGGGA 29858867
Query 16673 CGTAAGATTTATGGTTTTGG 16692
|| | | || || |||||
Sbjct 29858866 CGCACTCTCTACGGCTTTGG 29858847
Score = 147 bits (162), Expect = 3e-31
Identities = 155/204 (76%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||||||||||||||||| || || || |||||||| || ||||||||||| || ||
Sbjct 29833042 CGCTAAGCGTCATCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 29832983
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| ||||||||||| || || || || ||||| |||| || | |||| |||||||
Sbjct 29832982 CCGGCGTCTGGCTCGGCGCGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAAGAGAC 29832923
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || ||||| | ||||| ||| ||| |||| ||||||| || ||| || ||
Sbjct 29832922 GCGCGGCGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGTGATGCTGTCACCTACACGGA 29832863
Query 16612 GCACGCTAAACGTAAGACTGTCAC 16635
|||||| || || ||||| |||||
Sbjct 29832862 GCACGCCAAGCGCAAGACGGTCAC 29832839
Score = 145 bits (160), Expect = 1e-30
Identities = 188/260 (72%), Gaps = 0/260 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|||||||| ||||||| || || || |||||||| || ||||||||||| || |||
Sbjct 29792311 GCTAAGCGCCATCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCATC 29792252
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| || |||||||| || || || || ||||| |||| || | |||| |||||||
Sbjct 29792251 CGGCGCCTGGCTCGGCGCGGCGGCGTGAAGCGCATCTCGGGCCTCATCTACGAAGAGACG 29792192
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| | || ||||| | ||||| ||| ||| |||| |||||| || ||| || |||
Sbjct 29792191 CGCGGCGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGTGATGCCGTCACCTACACGGAG 29792132
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
||||| || || ||||| ||||| ||||||| | || || || |||| || || ||
Sbjct 29792131 CACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTGTACGCCCTGAAGCGCCAGGGA 29792072
Query 16673 CGTAAGATTTATGGTTTTGG 16692
|| | | || ||||| ||
Sbjct 29792071 CGCACTCTCTACGGTTTCGG 29792052
Score = 109 bits (120), Expect = 9e-20
Identities = 123/165 (75%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||||||||| ||||||| || || || |||||||| || ||||||||||| || ||
Sbjct 29752272 CGCTAAGCGCCATCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 29752213
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || |||||||| || || || || ||||| |||| || | |||| |||||||
Sbjct 29752212 CCGGCGCCTGGCTCGGCGCGGCGGCGTGAAGCGCATCTCGGGCCTCATCTACGAAGAGAC 29752153
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGC 16596
|| | || ||||| | ||||| ||| ||| |||| ||||||
Sbjct 29752152 GCGCGGCGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGTGATGC 29752108
>seq244744
Length=209
Score = 96.9 bits (106), Expect = 5e-16
Identities = 141/198 (71%), Gaps = 1/198 (1%)
Strand=Plus/Minus
Query 16448 AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGT 16507
|||| ||| |||||||||||||||| || || |||||||||||| | | | ||| |
Sbjct 202 AGAT-TCTAAGAGATAACATCCAAGGTATTACTAAGCCAGCTATCAGAAGATTAGCTAGA 144
Query 16508 CGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAG 16567
| ||||| ||||||||| | ||||| ||| |||| ||||| | | | ||| |||||
Sbjct 143 AGAGGTGGTGTCAAGCGTATTTCTGGTTTGATCTACGAAGAAGTCAGAGCTGTCTTGAAA 84
Query 16568 ATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAG 16627
|||| | | |||| ||| || || | ||| ||||| ||||| || | |||
Sbjct 83 TCCTTCTTGGAATCCGTCATCAGAGACTCTGTTACCTACACCGAACACGCCAAGAGAAAG 24
Query 16628 ACTGTCACCTCCATGGAT 16645
||||| || || |||||
Sbjct 23 ACTGTTACTTCTTTGGAT 6
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 78776378871804
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |