Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015
-06-23] 326,828 sequences; 1,595,295,449 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq212 120 4e-22
seq95 120 4e-22
>seq212
Length=4710727
Score = 120 bits (132), Expect = 4e-22
Identities = 108/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
|||| ||||| ||||| ||||| || || || || | ||| ||||| ||||| | ||| |
Sbjct 4384856 CCTCATCTCTGCTAATAAGTTCATTAGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 4384915
Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445
| ||||| ||||| | ||| || || || ||||||||||||||||| |||||||||||||
Sbjct 4384916 TCAGCCAGAATATAGCAGCAAAGGAACCCGAAAAGAAGATTCCTTCAACTGCAGCAAAGG 4384975
Query 33446 CAATAAGTCTCTCTCC 33461
||| | ||||| ||
Sbjct 4384976 CAACCACCCTCTCACC 4384991
Score = 84.2 bits (92), Expect = 3e-11
Identities = 70/86 (81%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 33691 TTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATAT 33750
|||||||| || ||||| ||||||||||||||||| |||| ||||| ||||| |||
Sbjct 4390604 TTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCCAGAACATGAGAGATAAAGTAT 4390663
Query 33751 TTTTCGTCTGGTGTTAGTTTATTCCA 33776
||||| |||| | |||| || |||||
Sbjct 4390664 TTTTCATCTGCTTTTAGCTTGTTCCA 4390689
>seq95
Length=9561987
Score = 120 bits (132), Expect = 4e-22
Identities = 101/124 (81%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
|||| |||||||| || ||||| || ||||| |||||||| ||||||| || | || |
Sbjct 3110867 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 3110808
Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445
| |||||||| || || || ||||| |||||||||||||||||||| ||||| ||||| |
Sbjct 3110807 TCAGCCAAAAAATTGATGCAAATGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 3110748
Query 33446 CAAT 33449
| ||
Sbjct 3110747 CTAT 3110744
Score = 93.3 bits (102), Expect = 5e-14
Identities = 95/124 (77%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 33564 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33623
|||||||| || || || || | |||||| |||||||| ||||| || ||||| |||||
Sbjct 3108662 ATCTTTAATGTATGTGTCAATTAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGC 3108603
Query 33624 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33683
||||| || || |||||||| | || || || |||||||||||| || || || ||
Sbjct 3108602 AATCTGGAAGCCATAGAAACAACGGGCTTCTGTGATCTGTACTTCTTGACTGAACCGCTC 3108543
Query 33684 CGCC 33687
| ||
Sbjct 3108542 CACC 3108539
Score = 82.4 bits (90), Expect = 9e-11
Identities = 75/95 (79%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 32998 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33057
||||| |||||||| | || |||||||| || || || || || || || ||||| |||
Sbjct 3112187 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAGTTGGTTTTGCCT 3112128
Query 33058 TCCAATGATATATTTTCCATGAAATCAAACGGATT 33092
|||| || || ||||||||||| ||||| |||||
Sbjct 3112127 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 3112093
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620402242656480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |