Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015
-06-23] 326,828 sequences; 1,595,295,449 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq2372 127 1e-24
seq408 109 4e-19
seq286261 104 2e-17
seq285 96.9 2e-15
seq511 91.5 1e-13
SEQ11534 89.7 3e-13
seq5469 82.4 5e-11
>seq2372
Length=8625
Score = 127 bits (140), Expect = 1e-24
Identities = 85/95 (89%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||||||||||| |||||||| ||||| || ||||||||
Sbjct 236 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 177
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||||||||||||||||
Sbjct 176 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 142
Score = 127 bits (140), Expect = 1e-24
Identities = 85/95 (89%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||||||||||| |||||||| ||||| || ||||||||
Sbjct 2043 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 1984
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||||||||||||||||
Sbjct 1983 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 1949
>seq408
Length=76572
Score = 109 bits (120), Expect = 4e-19
Identities = 80/93 (86%), Gaps = 5/93 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||||||||||| |||||||| ||||| || ||||||||
Sbjct 39660 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 39601
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989
| |||| |||||| | |||||||||||||| ||
Sbjct 39600 TCATCCATTCATGAGTGTCACTAATTAGATAAC 39568
Score = 91.5 bits (100), Expect = 1e-13
Identities = 67/78 (86%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 19946 TCTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCG 20005
||||||||||||||||||||||||||||||||| | ||||||||| |||| |||||||
Sbjct 63917 TCTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTCCAGTACTTGTTGACTATTGGTCTCG 63976
Query 20006 CGGTAATATTTAGCCTTA 20023
| ||||||||||||
Sbjct 63977 TGCCGGTATTTAGCCTTA 63994
>seq286261
Length=322
Score = 104 bits (114), Expect = 2e-17
Identities = 69/77 (90%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||||||||||||||| |||||| |||| |||||||||||||||||||||| |
Sbjct 133 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCATCACTGTACTTGTTCGCTATCGGTCTCTC 192
Query 20007 GGTAATATTTAGCCTTA 20023
| |||||||||| |||
Sbjct 193 GCCAATATTTAGCTTTA 209
>seq285
Length=3013400
Score = 96.9 bits (106), Expect = 2e-15
Identities = 160/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| |||| ||||| ||| | || |||||| |||||| || || ||||| |||||
Sbjct 2914832 CCACCCCTCAGACGCAGCACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAG 2914773
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| ||| | || || | || || || ||||| || || | || ||||| | ||
Sbjct 2914772 AGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGAGGA 2914713
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| |||||| ||||| ||||| ||| ||||||| | || || | |||||
Sbjct 2914712 ATGCCTTCCTTGTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACC 2914653
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321
|| | || || || || ||||||||||| ||||| || |||||||| |||
Sbjct 2914652 TCCAGGGTGATGGTCTTCCCCGTCAAGGTCTTCACAAAGATCTGCATTTTT 2914602
Score = 87.8 bits (96), Expect = 1e-12
Identities = 158/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 38088 TTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCA 38147
|| ||||| |||| ||||| ||| | ||| || ||| ||||| || || ||||| ||
Sbjct 2918008 TTGCCACCCCTCAGACGCAGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCG 2917949
Query 38148 GACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207
||||| || | || || | || || || ||||| || || | || ||||| | |
Sbjct 2917948 GACAAGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGG 2917889
Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCA 38267
|| | |||||||||||| || || ||| ||||||| | || || | |||
Sbjct 2917888 GGAATGCCTTCTTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCA 2917829
Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
|| || | || || || || || |||| ||| ||||| || |||||||||
Sbjct 2917828 ACCTCCAGGGTGATGGTCTTCCCTGTCAGGGTCTTCACAAAGATCTGCATG 2917778
>seq511
Length=1428375
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| |||| ||||| ||| | || || ||| |||||| || || ||||| ||||||
Sbjct 1121408 CCACCCCTCAGACGCAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 1121349
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| || | || || | || || || ||||| || || || || ||||| | ||||
Sbjct 1121348 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGGGGG 1121289
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| ||| || |||||| || || ||| ||||||| | || || | || ||
Sbjct 1121288 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCGACC 1121229
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
|| | || || || || || |||| ||| ||||| || |||||||||||
Sbjct 1121228 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 1121179
>SEQ11534
Length=4259
Score = 89.7 bits (98), Expect = 3e-13
Identities = 66/77 (86%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 19946 TCTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCG 20005
|||||||||||||||||||||||||||| ||||||| |||||||| |||| |||||||
Sbjct 2635 TCTCTCTCTTCAAAGTTCTTTTCAACTTCCCCTCACATTACTTGTTGACTATTGGTCTCG 2694
Query 20006 CGGTAATATTTAGCCTT 20022
| | || ||||||||
Sbjct 2695 TGCTGGTACTTAGCCTT 2711
>seq5469
Length=34243
Score = 82.4 bits (90), Expect = 5e-11
Identities = 74/93 (80%), Gaps = 5/93 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG-----GGGGTAATCTCGT 25956
|||| | ||||||||||||||||||| || || ||||| ||| | || |||||| |
Sbjct 13350 AAGCTCTTTCCCTTGGCTGTGGTTTCACTGGAGAGTAGGTAGGAACAGTGGGAATCTCAT 13291
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989
| |||| ||||||| |||||||| ||||||||
Sbjct 13290 TCATCCATTCATGCATGTCACTAAGTAGATGAC 13258
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 333613032870068
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |