Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015
-06-23] 326,828 sequences; 1,595,295,449 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq95 116 5e-21
seq319586 93.3 5e-14
seq3026 93.3 5e-14
seq212 84.2 3e-11
>seq95
Length=9561987
Score = 116 bits (128), Expect = 5e-21
Identities = 100/124 (81%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742
|||| |||||||| || | ||| || ||||| |||||||| ||||||| || | || |
Sbjct 3110867 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 3110808
Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802
| |||||||| || || |||||||| ||||||||||| |||||||| ||||| ||||| |
Sbjct 3110807 TCAGCCAAAAAATTGATGCAAATGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 3110748
Query 32803 CAAT 32806
| ||
Sbjct 3110747 CTAT 3110744
Score = 93.3 bits (102), Expect = 5e-14
Identities = 84/106 (79%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 32921 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 32980
|||||||| ||||| ||||| | |||||| |||||||| ||||| || ||||| |||||
Sbjct 3108662 ATCTTTAATGTATGTGTCAATTAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGC 3108603
Query 32981 CATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCT 33026
|| || || || ||||| || | || || || ||||||||||||
Sbjct 3108602 AATCTGGAAGCCATAGAAACAACGGGCTTCTGTGATCTGTACTTCT 3108557
>seq319586
Length=853
Score = 93.3 bits (102), Expect = 5e-14
Identities = 120/166 (72%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869
|||| || | ||| || ||||||||||| | ||| || || || || || || || || |
Sbjct 12 CACTGAACACTTTCTTAGTTTCTTTGTGCAAATTGGACACTGCAATCCTCGCTGCCAGGA 71
Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929
| || || || || |||| ||||| ||| || || |||| || |||||||| ||||
Sbjct 72 TAGCGTAGTCAGGGTGTTTGGTAGTCAGAGTTGCAGCCGTTTCAGCAGCCAGAGTATCCA 131
Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975
||| || || || |||||| | || | ||||| || || |||||
Sbjct 132 GTTCCACTGTCGTGACACCACTGTACAGCCCTTGAATCACTTTCAT 177
>seq3026
Length=70695
Score = 93.3 bits (102), Expect = 5e-14
Identities = 120/166 (72%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869
|||| || | ||| || ||||||||||| | ||| || || || || || || || || |
Sbjct 51076 CACTGAACACTTTCTTAGTTTCTTTGTGCAAATTGGACACTGCAATCCTCGCTGCCAGGA 51017
Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929
| || || || || |||| ||||| ||| || || |||| || |||||||| ||||
Sbjct 51016 TAGCGTAGTCAGGGTGTTTGGTAGTCAGAGTTGCAGCCGTTTCAGCAGCCAGAGTATCCA 50957
Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975
||| || || || |||||| | || | ||||| || || |||||
Sbjct 50956 GTTCCACTGTCGTGACACCACTGTACAGCCCTTGAATCACTTTCAT 50911
>seq212
Length=4710727
Score = 84.2 bits (92), Expect = 3e-11
Identities = 70/86 (81%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 33048 TTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATAT 33107
|||||||| || ||||| ||||||||||||||||| |||| ||||| ||||| |||
Sbjct 4390604 TTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCCAGAACATGAGAGATAAAGTAT 4390663
Query 33108 TTTTCGTCTGGTGTTAGTTTATTCCA 33133
||||| |||| | |||| || |||||
Sbjct 4390664 TTTTCATCTGCTTTTAGCTTGTTCCA 4390689
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 631043391508800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |