Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015 -06-23] 326,828 sequences; 1,595,295,449 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq95 116 5e-21 seq319586 93.3 5e-14 seq3026 93.3 5e-14 seq212 84.2 3e-11 >seq95 Length=9561987 Score = 116 bits (128), Expect = 5e-21 Identities = 100/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| |||||||| || | ||| || ||||| |||||||| ||||||| || | || | Sbjct 3110867 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 3110808 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | |||||||| || || |||||||| ||||||||||| |||||||| ||||| ||||| | Sbjct 3110807 TCAGCCAAAAAATTGATGCAAATGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 3110748 Query 32803 CAAT 32806 | || Sbjct 3110747 CTAT 3110744 Score = 93.3 bits (102), Expect = 5e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 32921 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 32980 |||||||| ||||| ||||| | |||||| |||||||| ||||| || ||||| ||||| Sbjct 3108662 ATCTTTAATGTATGTGTCAATTAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGC 3108603 Query 32981 CATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCT 33026 || || || || ||||| || | || || || |||||||||||| Sbjct 3108602 AATCTGGAAGCCATAGAAACAACGGGCTTCTGTGATCTGTACTTCT 3108557 >seq319586 Length=853 Score = 93.3 bits (102), Expect = 5e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| || | ||| || ||||||||||| | ||| || || || || || || || || | Sbjct 12 CACTGAACACTTTCTTAGTTTCTTTGTGCAAATTGGACACTGCAATCCTCGCTGCCAGGA 71 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 | || || || || |||| ||||| ||| || || |||| || |||||||| |||| Sbjct 72 TAGCGTAGTCAGGGTGTTTGGTAGTCAGAGTTGCAGCCGTTTCAGCAGCCAGAGTATCCA 131 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 ||| || || || |||||| | || | ||||| || || ||||| Sbjct 132 GTTCCACTGTCGTGACACCACTGTACAGCCCTTGAATCACTTTCAT 177 >seq3026 Length=70695 Score = 93.3 bits (102), Expect = 5e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| || | ||| || ||||||||||| | ||| || || || || || || || || | Sbjct 51076 CACTGAACACTTTCTTAGTTTCTTTGTGCAAATTGGACACTGCAATCCTCGCTGCCAGGA 51017 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 | || || || || |||| ||||| ||| || || |||| || |||||||| |||| Sbjct 51016 TAGCGTAGTCAGGGTGTTTGGTAGTCAGAGTTGCAGCCGTTTCAGCAGCCAGAGTATCCA 50957 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 ||| || || || |||||| | || | ||||| || || ||||| Sbjct 50956 GTTCCACTGTCGTGACACCACTGTACAGCCCTTGAATCACTTTCAT 50911 >seq212 Length=4710727 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 33048 TTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATAT 33107 |||||||| || ||||| ||||||||||||||||| |||| ||||| ||||| ||| Sbjct 4390604 TTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCCAGAACATGAGAGATAAAGTAT 4390663 Query 33108 TTTTCGTCTGGTGTTAGTTTATTCCA 33133 ||||| |||| | |||| || ||||| Sbjct 4390664 TTTTCATCTGCTTTTAGCTTGTTCCA 4390689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631043391508800