Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015 -06-23] 326,828 sequences; 1,595,295,449 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq285 109 5e-19 seq266184 102 7e-17 >seq285 Length=3013400 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || || ||||||| | || || ||| | | Sbjct 2917779 ATGCAGATCTTTGTGAAGACCCTGACAGGGAAGACCATCACCCTGGAGGTTGAGCCCAGT 2917838 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| || ||| ||||||||||| ||||| || || || Sbjct 2917839 GACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAAGAAGGCATTCCCCCAGATCAG 2917898 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||| ||||| || | ||||||| ||||| || ||| ||||| Sbjct 2917899 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCTTGTCCGACTACAAC 2917958 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAA 25228 || || || |||||||| || ||| | ||||| | || || || || || Sbjct 2917959 ATCCAGAAGGAATCCACCCTGCATCTTGTGCTGCGTCTGAGGGGTGGCAA 2918008 >seq266184 Length=251 Score = 102 bits (112), Expect = 7e-17 Identities = 120/158 (76%), Gaps = 6/158 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || |||||||| |||||||| | || || | ||||| || || ||| Sbjct 185 ATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTGGAAGTTGAATCTTCT 126 Query 25059 GACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||||||| || || || ||| |||| | ||| ||||| ||||| || ||||||||| Sbjct 125 GACACTATTGA--CAATGTCAAGTCAAAGATTCAA-GACAAGGAAGGTATCCCACCTGAC 69 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGA 25153 ||||| | | || ||||| || || ||||| ||||| Sbjct 68 CAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGA 31 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 431601960868820