Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015
-06-23] 326,828 sequences; 1,595,295,449 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq285 161 2e-34
seq266184 145 1e-29
SEQ29648 102 1e-16
seq1866 102 1e-16
>seq285
Length=3013400
Score = 161 bits (178), Expect = 2e-34
Identities = 167/219 (76%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303
|| |||| || | ||| || |||||||| || |||||||| || || ||||| || |
Sbjct 2914823 AGACGCAGCACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGT 2914764
Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363
|||||||| | |||||| || || || || || || || || || || ||||||||||||
Sbjct 2914763 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGAGGAATGCCTTCC 2914704
Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423
|||||||| || || |||||||| ||| |||||||| | || || |||| ||||
Sbjct 2914703 TTGTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTG 2914644
Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462
||||| || ||||| | |||||| || || |||||||||
Sbjct 2914643 ATGGTCTTCCCCGTCAAGGTCTTCACAAAGATCTGCATT 2914605
Score = 159 bits (176), Expect = 6e-34
Identities = 166/218 (76%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303
|| |||| || | ||| || |||||||| || |||||||| || || ||||| || |
Sbjct 2917768 AGACGCAGCACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGT 2917709
Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363
|||||||| | |||||| || || || || || || || || || || ||||||||||||
Sbjct 2917708 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGAGGAATGCCTTCC 2917649
Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423
|||||||| || || |||||||| ||| |||||||| | || || |||| ||||
Sbjct 2917648 TTGTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTG 2917589
Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| || || || |||||||| || || ||||||||
Sbjct 2917588 ATGGTCTTCCCTGTCAGGGTCTTCACAAAGATCTGCAT 2917551
Score = 150 bits (166), Expect = 3e-31
Identities = 159/208 (76%), Gaps = 1/208 (0%)
Strand=Plus/Minus
Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313
|||| || || ||||| || || |||||||| || ||||| | || | ||||||||| |
Sbjct 2917986 CAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGCCCATCTTCCA 2917927
Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373
|||||| || || || || || || || || || || ||||||||||| |||||||| |
Sbjct 2917926 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCTTTGTCTTGGA 2917867
Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433
|||| |||||||| ||| |||||||| | || || |||| ||||||||| || |
Sbjct 2917866 TCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTCC 2917807
Query 68434 CCGTGAGGGTCTTGACGAATATCTGCAT 68461
| || |||||||| || || ||||||||
Sbjct 2917806 CTGTCAGGGTCTTCACAAAGATCTGCAT 2917779
Score = 95.1 bits (104), Expect = 2e-14
Identities = 87/110 (79%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 68352 GGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCT 68411
|||||||||||||||||||| || || |||||||| ||| |||||||| | ||
Sbjct 2914943 GGAATGCCTTCCTTGTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCA 2914884
Query 68412 ACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| |||| ||||||||| || || || |||||||| || || ||||||||
Sbjct 2914883 ACCTCCAGGGTGATGGTCTTCCCTGTCAGGGTCTTCACAAAGATCTGCAT 2914834
>seq266184
Length=251
Score = 145 bits (160), Expect = 1e-29
Identities = 143/185 (77%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 68277 TGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGT 68336
|||||||| || || || | || || || ||||| || ||||| || || || || | |
Sbjct 1 TGGATGTTGTAGTCAGACAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAAT 60
Query 68337 CTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATG 68396
||||||||||| ||||| || |||||||||||||||||||||| |||||| || ||
Sbjct 61 CTTTGTTGGTCAGGTGGGATACCTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATA 120
Query 68397 GTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATC 68456
||||| | ||||| ||||||| ||| || || || || || | ||||||||||| ||
Sbjct 121 GTGTCAGAAGATTCAACTTCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATT 180
Query 68457 TGCAT 68461
|||||
Sbjct 181 TGCAT 185
>SEQ29648
Length=521
Score = 102 bits (112), Expect = 1e-16
Identities = 87/105 (83%), Gaps = 2/105 (2%)
Strand=Plus/Minus
Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTACTTC 68416
||||||||||| || ||||| ||||| ||| |||||||||||| |||| || || ||
Sbjct 124 CCTTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATGGTGTC-GCTGGGCTCCACCTC 66
Query 68417 CAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
| |||||||||||| ||||| |||||||| ||||| ||||||||
Sbjct 65 GAGGGTGATGGTTTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 21
>seq1866
Length=106666
Score = 102 bits (112), Expect = 1e-16
Identities = 87/105 (83%), Gaps = 2/105 (2%)
Strand=Plus/Plus
Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTC 68416
||||||||||| || ||||| ||||| ||| |||||||||||| ||| | || || ||
Sbjct 7171 CCTTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATGGTGTC-GCTGGGCTCCACCTC 7229
Query 68417 CAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
| |||||||||||| ||||| |||||||| ||||| ||||||||
Sbjct 7230 GAGGGTGATGGTTTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 7274
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 917857249928160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |