Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015 -06-23] 326,828 sequences; 1,595,295,449 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq3026 98.7 1e-15 seq511 96.9 3e-15 seq285 84.2 2e-11 >seq3026 Length=70695 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 153642 TACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTG 153701 |||| ||| || || | ||||||||||||||||| ||| ||||| || ||||||||| Sbjct 57017 TACTCCACTATTTCCGTACAGAGGTTGCTGCATTTGATGGTCCCCAAGTTCTGCTGATTG 56958 Query 153702 CTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTT 153761 || || || ||||| | ||||||| |||||||||| || ||| ||||| || | | Sbjct 56957 CTCTTCCGGTTGCAGGAGTCTTTGTAGAGCATGTAAGGGGTGCCAGTCTCTGTCTGGGAT 56898 Query 153762 TCGACGATA 153770 |||| |||| Sbjct 56897 TCGATGATA 56889 >seq511 Length=1428375 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 138385 CAGCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCG 138444 ||||| || | || ||||| || | || | | | |||||||| || |||||||||||| Sbjct 1122551 CAGCCACCCCTCAGACGCAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCG 1122492 Query 138445 CTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGA 138504 || || ||| || || || || || || | | |||| |||||||| || || || Sbjct 1122491 GACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGG 1122432 Query 138505 GGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCC 138564 || || || || ||||| ||| || || | | || | ||||||| | | ||| Sbjct 1122431 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCA 1122372 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||||||| || | || || ||||||| || || ||||| ||||||||| Sbjct 1122371 ACCTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATG 1122321 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || | || ||||| || | || | | | |||||||| || |||||||||||| Sbjct 1121637 GCCACCCCTCAGACGCAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 1121578 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || ||| || || || || || || | | |||| |||||||| || || || || Sbjct 1121577 CAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGGGG 1121518 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | | || | ||||||| | | ||| || Sbjct 1121517 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCAAC 1121458 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||||| || | || || ||||||| || || ||||| ||||||||| Sbjct 1121457 CTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATG 1121409 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || | || ||||| || | || | | | |||||||| || |||||||||||| Sbjct 1121865 GCCACCCCTCAGACGCAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 1121806 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || ||| || || || || || || | | |||| |||||||| || || || || Sbjct 1121805 CAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGGGG 1121746 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | | || | ||||||| | | ||| || Sbjct 1121745 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCAAC 1121686 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||||| || | || || ||||||| || || ||||| ||||||||| Sbjct 1121685 CTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATG 1121637 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || | || ||||| || | || | | | |||||||| || |||||||||||| Sbjct 1122093 GCCACCCCTCAGACGCAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 1122034 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || ||| || || || || || || | | |||| |||||||| || || || || Sbjct 1122033 CAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGGGG 1121974 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | | || | ||||||| | | ||| || Sbjct 1121973 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCAAC 1121914 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||||| || | || || ||||||| || || ||||| ||||||||| Sbjct 1121913 CTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATG 1121865 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || | || ||||| || | || | | | |||||||| || |||||||||||| Sbjct 1122321 GCCACCCCTCAGACGCAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 1122262 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || ||| || || || || || || | | |||| |||||||| || || || || Sbjct 1122261 CAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGGGG 1122202 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | | || | ||||||| | | ||| || Sbjct 1122201 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCAAC 1122142 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||||| || | || || ||||||| || || ||||| ||||||||| Sbjct 1122141 CTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATG 1122093 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || | || ||||| || | || | | | |||||||| || ||||||||||| Sbjct 1121409 GCCACCCCTCAGACGCAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 1121350 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || ||| || || || || || || | | |||| |||||||| || || || || Sbjct 1121349 CAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGGGG 1121290 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | | || | ||||||| | | ||| || Sbjct 1121289 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCGAC 1121230 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||| | || | || || |||||||| || || ||||| ||||||||| Sbjct 1121229 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 1121181 >seq285 Length=3013400 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || | || ||||| || | ||| | | | || ||||| || |||||||||||| Sbjct 2918006 GCCACCCCTCAGACGCAGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGA 2917947 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || ||| || || || || || || | | |||| || | ||| || || || || Sbjct 2917946 CAAGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGG 2917887 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||||||||| ||| || || | | || | |||||| | | ||| || Sbjct 2917886 AATGCCTTCTTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAAC 2917827 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||| | || | || || || ||||| || || ||||| ||||||||| Sbjct 2917826 CTCCAGGGTGATGGTCTTCCCTGTCAGGGTCTTCACAAAGATCTGCATG 2917778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494234994404160