Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015
-06-23] 326,828 sequences; 1,595,295,449 total letters
Query= NC_012783.2
Length=226205
Score E
Sequences producing significant alignments: (Bits) Value
seq189 161 1e-34
seq669 114 2e-20
>seq189
Length=739144
Score = 161 bits (178), Expect = 1e-34
Identities = 181/242 (75%), Gaps = 0/242 (0%)
Strand=Plus/Minus
Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786
|| || | ||| || || |||| |||||||| |||||||||| || || ||||| ||
Sbjct 477043 ATGAGTCTAGTAGTCTGGAACAGTCGCTCGTCATCCCATTCCGGATGCTCCTGTTTCAGG 476984
Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846
| || ||||| | ||||||||||| |||||||| || || |||||||||||||| ||
Sbjct 476983 ATGTCACAGACTCGATTGTGTTCTCTGAGCCATATTGTAGCATACATCATTAAACCTGGG 476924
Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCA 9906
|| ||||||||||| || | ||| || | || |||| | || || || | || |
Sbjct 476923 ACCAAACCAAACACCTCCTGCCCAACAGAGAACTGCAGGTGCTCAGGAACGTGAGGAGGG 476864
Query 9907 TACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACC 9966
|||| ||| | ||||||| || || || ||||| ||||||||||| |||||||| | |
Sbjct 476863 TACAACATCTCTGCCTGGGTGTCCTTCACTGTGGGTGGATACATTTCCCCGTCAATCATC 476804
Query 9967 TG 9968
||
Sbjct 476803 TG 476802
Score = 138 bits (152), Expect = 2e-27
Identities = 219/314 (70%), Gaps = 0/314 (0%)
Strand=Plus/Minus
Query 8862 GTTCCGCGTTGGAAACTCGGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGA 8921
|||| | ||| | || |||| || | || ||||| || ||||||||| || ||||
Sbjct 479018 GTTCAGGGTTTAAGACATGGAAGGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGA 478959
Query 8922 GGGACTGAATGGTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGG 8981
| ||| | || || || || | || || || || || | || ||||| |||||||
Sbjct 478958 GCTTCTGGAAGGAGGCAGTATTGATTATTTCAAAGCCCACTTTTCCTCCGAAAGTGCTGG 478899
Query 8982 GTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAG 9041
| ||||||||| | ||||||||||| |||| |||| || ||||||| ||| || || |
Sbjct 478898 GCTTCCAGTACTCGGGGGAGCAGATAGCGTTTCCCATCAGTCCTTTCAGGGAGAATGGCG 478839
Query 9042 CCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGA 9101
| || | || | || | || || |||||||| || || ||||| || || |||| ||
Sbjct 478838 CTCCAATTTCTACCATCGTTTCGCCAAAGATGGCGCCTGGTCGCGGCTTCTCTACGAGGA 478779
Query 9102 AGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTA 9161
||| | || || || | ||| || | ||| ||||| || |||||| || || || |
Sbjct 478778 GGCCTGGATACAGCTCCATAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCTGCTGCCA 478719
Query 9162 TCTCCTTCTCACCT 9175
| || || || |||
Sbjct 478718 TTTCTTTTTCTCCT 478705
Score = 131 bits (144), Expect = 2e-25
Identities = 149/200 (75%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 9769 GGGTGTTCGTGTTTGAGAACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCG 9828
|| || || ||||| || | || ||||| | ||||||||||| |||||||| || ||
Sbjct 468529 GGATGCTCCTGTTTCAGGATGTCACAGACTCGATTGTGTTCTCTGAGCCATATTGTAGCA 468470
Query 9829 TACATCATTAAACCCGGCACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCA 9888
|||||||||||||| || || ||||||||||| || | ||| || | || |||| |
Sbjct 468469 TACATCATTAAACCTGGGACCAAACCAAACACCTCCTGCCCAACAGAGAACTGCAGGTGC 468410
Query 9889 TCGGGCACTTCGGGCGCATACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATAC 9948
|| || || | || | |||| ||| | ||||||| || || || ||||| ||||||
Sbjct 468409 TCAGGAACGTGAGGAGGGTACAACATCTCTGCCTGGGTGTCCTTCACTGTGGGTGGATAC 468350
Query 9949 ATTTCACCGTCAATAACCTG 9968
||||| |||||||| | |||
Sbjct 468349 ATTTCCCCGTCAATCATCTG 468330
Score = 114 bits (126), Expect = 2e-20
Identities = 102/128 (80%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 10840 CTTACGGGTCGAACAGTGCCGATCATAAAACCCCGTCCGCGTACAATCGCACCAATAACG 10899
|||||| || | |||| | ||||||||||||||| ||| || |||||| || ||
Sbjct 456831 CTTACGCGTTGTGCAGTTCTCCCCATAAAACCCCGTCCTCGTGCAGTCGCACTCGTATCG 456772
Query 10900 ATCAAACCCCACCGTCATGCATACCCCTCGATTCTGGCACGGGTGCGAACAGCAAGGGTT 10959
||| || ||| | |||||||||||||| | ||||||||||||| || |||||||||||
Sbjct 456771 ATCGAATCCCGCGGTCATGCATACCCCCCTGTTCTGGCACGGGTTTGAGCAGCAAGGGTT 456712
Query 10960 GGCTGCAA 10967
||||||||
Sbjct 456711 GGCTGCAA 456704
Score = 114 bits (126), Expect = 2e-20
Identities = 102/128 (80%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 10840 CTTACGGGTCGAACAGTGCCGATCATAAAACCCCGTCCGCGTACAATCGCACCAATAACG 10899
|||||| || | |||| | ||||||||||||||| ||| || |||||| || ||
Sbjct 465776 CTTACGCGTTGTGCAGTTCTCCCCATAAAACCCCGTCCTCGTGCAGTCGCACTCGTATCG 465717
Query 10900 ATCAAACCCCACCGTCATGCATACCCCTCGATTCTGGCACGGGTGCGAACAGCAAGGGTT 10959
||| || ||| | |||||||||||||| | ||||||||||||| || |||||||||||
Sbjct 465716 ATCGAATCCCGCGGTCATGCATACCCCCCTGTTCTGGCACGGGTTTGAGCAGCAAGGGTT 465657
Query 10960 GGCTGCAA 10967
||||||||
Sbjct 465656 GGCTGCAA 465649
Score = 114 bits (126), Expect = 2e-20
Identities = 102/128 (80%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 10840 CTTACGGGTCGAACAGTGCCGATCATAAAACCCCGTCCGCGTACAATCGCACCAATAACG 10899
|||||| || | |||| | ||||||||||||||| ||| || |||||| || ||
Sbjct 474248 CTTACGCGTTGTGCAGTTCTCCCCATAAAACCCCGTCCTCGTGCAGTCGCACTCGTATCG 474189
Query 10900 ATCAAACCCCACCGTCATGCATACCCCTCGATTCTGGCACGGGTGCGAACAGCAAGGGTT 10959
||| || ||| | |||||||||||||| | ||||||||||||| || |||||||||||
Sbjct 474188 ATCGAATCCCGCGGTCATGCATACCCCCCTGTTCTGGCACGGGTTTGAGCAGCAAGGGTT 474129
Query 10960 GGCTGCAA 10967
||||||||
Sbjct 474128 GGCTGCAA 474121
Score = 98.7 bits (108), Expect = 1e-15
Identities = 163/232 (70%), Gaps = 4/232 (2%)
Strand=Plus/Minus
Query 9493 ATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCA 9552
||||| |||||||| | ||| || | |||| |||| | |||| ||| |||||
Sbjct 478189 ATGGAGTTGTTGTAGAGGAACTGCTGGTAAGTGTACTCCTGGTCGTGTATCTGAAAAGTG 478130
Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612
|| |||| || | |||||| |||| || |||||||| || || || || |||||||||
Sbjct 478129 TCTGGCAGAAGCGGGTGCCAGTGGTACAGAGTATTGAATTCAGCTGCAATGCGGTTCTGG 478070
Query 9613 TACTGAAAG-GC-GGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670
|| |||||| || ||| ||||| | ||| || ||||| | || | ||||||||| |
Sbjct 478069 TATTGAAAGCGCTGGT--TGAACAACAGCTCGGGATCAAACTTCAGTTTGAAGTGGTAGC 478012
Query 9671 CGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCCGGT 9722
| || || || || || || | | || | ||| || || || || || ||
Sbjct 478011 CACTCAGATGTTGTACGTAGTCTTCAATAACAATCTTGATCGTCTCTCCTGT 477960
Score = 84.2 bits (92), Expect = 3e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 10389 ACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTATA 10448
|||||| || || | || || ||||||||| | || || ||||| |||| || ||
Sbjct 457698 ACCTTTAACACCCATTGGTGTTGGGCAGTCATGTCCTACTGGTGGCAGGCTTCTTGTGTA 457639
Query 10449 ATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGCGG 10508
|||||| ||||| ||| | ||||||||||| |||||| ||| || |||||| ||
Sbjct 457638 ATAGGAGAGATTGGAATAGGCTTCCCAGCTTTTGTAGTTATAGTCACTGTTGTAAGTTGG 457579
Query 10509 GGGACTGTCAATCA 10522
|| ||||||||||
Sbjct 457578 TGGGCTGTCAATCA 457565
Score = 84.2 bits (92), Expect = 3e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 10389 ACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTATA 10448
|||||| || || | || || ||||||||| | || || ||||| |||| || ||
Sbjct 466643 ACCTTTAACACCCATTGGTGTTGGGCAGTCATGTCCTACTGGTGGCAGGCTTCTTGTGTA 466584
Query 10449 ATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGCGG 10508
|||||| ||||| ||| | ||||||||||| |||||| ||| || |||||| ||
Sbjct 466583 ATAGGAGAGATTGGAATAGGCTTCCCAGCTTTTGTAGTTATAGTCACTGTTGTAAGTTGG 466524
Query 10509 GGGACTGTCAATCA 10522
|| ||||||||||
Sbjct 466523 TGGGCTGTCAATCA 466510
Score = 84.2 bits (92), Expect = 3e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 10389 ACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTATA 10448
|||||| || || | || || ||||||||| | || || ||||| |||| || ||
Sbjct 475115 ACCTTTAACACCCATTGGTGTTGGGCAGTCATGTCCTACTGGTGGCAGGCTTCTTGTGTA 475056
Query 10449 ATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGCGG 10508
|||||| ||||| ||| | ||||||||||| |||||| ||| || |||||| ||
Sbjct 475055 ATAGGAGAGATTGGAATAGGCTTCCCAGCTTTTGTAGTTATAGTCACTGTTGTAAGTTGG 474996
Query 10509 GGGACTGTCAATCA 10522
|| ||||||||||
Sbjct 474995 TGGGCTGTCAATCA 474982
>seq669
Length=1422838
Score = 114 bits (126), Expect = 2e-20
Identities = 153/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 8966 CCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGCCCT 9025
||||| || |||||||||||||||||| | |||||||||||| ||| | | |||||
Sbjct 421557 CCGCCAAACGTGCTGGGTTTCCAGTACTCGGGGGAGCAGATGGGGTTTCCGAGAAGCCCC 421498
Query 9026 TTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGACGC 9085
|||| |||||||||||| || | ||| | ||||| || || || | | | |||| |
Sbjct 421497 TTCAGGGAAAACGGAGCTCCAATCTCCACCATGCTTTCCCCAAAAAGTGAATCGGGCTGG 421438
Query 9086 GGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCT 9145
||||| || | | ||||| ||| | || | || |||| ||| ||||| || ||
Sbjct 421437 GGTTTCTCAAGCAGCAAGCCCACGTAAAACTCCAGGGCATCGATGTCTCCATACAGCTCT 421378
Query 9146 TCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178
|||| ||| || || |||| | ||| ||| ||
Sbjct 421377 TCCAGCTCTGCTGCCTTCTCTTCCTCTCCTGCA 421345
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 720771317815200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |