Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015 -06-23] 326,828 sequences; 1,595,295,449 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq189 161 1e-34 seq669 114 2e-20 >seq189 Length=739144 Score = 161 bits (178), Expect = 1e-34 Identities = 181/242 (75%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786 || || | ||| || || |||| |||||||| |||||||||| || || ||||| || Sbjct 477043 ATGAGTCTAGTAGTCTGGAACAGTCGCTCGTCATCCCATTCCGGATGCTCCTGTTTCAGG 476984 Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846 | || ||||| | ||||||||||| |||||||| || || |||||||||||||| || Sbjct 476983 ATGTCACAGACTCGATTGTGTTCTCTGAGCCATATTGTAGCATACATCATTAAACCTGGG 476924 Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCA 9906 || ||||||||||| || | ||| || | || |||| | || || || | || | Sbjct 476923 ACCAAACCAAACACCTCCTGCCCAACAGAGAACTGCAGGTGCTCAGGAACGTGAGGAGGG 476864 Query 9907 TACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACC 9966 |||| ||| | ||||||| || || || ||||| ||||||||||| |||||||| | | Sbjct 476863 TACAACATCTCTGCCTGGGTGTCCTTCACTGTGGGTGGATACATTTCCCCGTCAATCATC 476804 Query 9967 TG 9968 || Sbjct 476803 TG 476802 Score = 138 bits (152), Expect = 2e-27 Identities = 219/314 (70%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 8862 GTTCCGCGTTGGAAACTCGGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGA 8921 |||| | ||| | || |||| || | || ||||| || ||||||||| || |||| Sbjct 479018 GTTCAGGGTTTAAGACATGGAAGGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGA 478959 Query 8922 GGGACTGAATGGTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGG 8981 | ||| | || || || || | || || || || || | || ||||| ||||||| Sbjct 478958 GCTTCTGGAAGGAGGCAGTATTGATTATTTCAAAGCCCACTTTTCCTCCGAAAGTGCTGG 478899 Query 8982 GTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAG 9041 | ||||||||| | ||||||||||| |||| |||| || ||||||| ||| || || | Sbjct 478898 GCTTCCAGTACTCGGGGGAGCAGATAGCGTTTCCCATCAGTCCTTTCAGGGAGAATGGCG 478839 Query 9042 CCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGA 9101 | || | || | || | || || |||||||| || || ||||| || || |||| || Sbjct 478838 CTCCAATTTCTACCATCGTTTCGCCAAAGATGGCGCCTGGTCGCGGCTTCTCTACGAGGA 478779 Query 9102 AGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTA 9161 ||| | || || || | ||| || | ||| ||||| || |||||| || || || | Sbjct 478778 GGCCTGGATACAGCTCCATAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCTGCTGCCA 478719 Query 9162 TCTCCTTCTCACCT 9175 | || || || ||| Sbjct 478718 TTTCTTTTTCTCCT 478705 Score = 131 bits (144), Expect = 2e-25 Identities = 149/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 9769 GGGTGTTCGTGTTTGAGAACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCG 9828 || || || ||||| || | || ||||| | ||||||||||| |||||||| || || Sbjct 468529 GGATGCTCCTGTTTCAGGATGTCACAGACTCGATTGTGTTCTCTGAGCCATATTGTAGCA 468470 Query 9829 TACATCATTAAACCCGGCACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCA 9888 |||||||||||||| || || ||||||||||| || | ||| || | || |||| | Sbjct 468469 TACATCATTAAACCTGGGACCAAACCAAACACCTCCTGCCCAACAGAGAACTGCAGGTGC 468410 Query 9889 TCGGGCACTTCGGGCGCATACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATAC 9948 || || || | || | |||| ||| | ||||||| || || || ||||| |||||| Sbjct 468409 TCAGGAACGTGAGGAGGGTACAACATCTCTGCCTGGGTGTCCTTCACTGTGGGTGGATAC 468350 Query 9949 ATTTCACCGTCAATAACCTG 9968 ||||| |||||||| | ||| Sbjct 468349 ATTTCCCCGTCAATCATCTG 468330 Score = 114 bits (126), Expect = 2e-20 Identities = 102/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 10840 CTTACGGGTCGAACAGTGCCGATCATAAAACCCCGTCCGCGTACAATCGCACCAATAACG 10899 |||||| || | |||| | ||||||||||||||| ||| || |||||| || || Sbjct 456831 CTTACGCGTTGTGCAGTTCTCCCCATAAAACCCCGTCCTCGTGCAGTCGCACTCGTATCG 456772 Query 10900 ATCAAACCCCACCGTCATGCATACCCCTCGATTCTGGCACGGGTGCGAACAGCAAGGGTT 10959 ||| || ||| | |||||||||||||| | ||||||||||||| || ||||||||||| Sbjct 456771 ATCGAATCCCGCGGTCATGCATACCCCCCTGTTCTGGCACGGGTTTGAGCAGCAAGGGTT 456712 Query 10960 GGCTGCAA 10967 |||||||| Sbjct 456711 GGCTGCAA 456704 Score = 114 bits (126), Expect = 2e-20 Identities = 102/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 10840 CTTACGGGTCGAACAGTGCCGATCATAAAACCCCGTCCGCGTACAATCGCACCAATAACG 10899 |||||| || | |||| | ||||||||||||||| ||| || |||||| || || Sbjct 465776 CTTACGCGTTGTGCAGTTCTCCCCATAAAACCCCGTCCTCGTGCAGTCGCACTCGTATCG 465717 Query 10900 ATCAAACCCCACCGTCATGCATACCCCTCGATTCTGGCACGGGTGCGAACAGCAAGGGTT 10959 ||| || ||| | |||||||||||||| | ||||||||||||| || ||||||||||| Sbjct 465716 ATCGAATCCCGCGGTCATGCATACCCCCCTGTTCTGGCACGGGTTTGAGCAGCAAGGGTT 465657 Query 10960 GGCTGCAA 10967 |||||||| Sbjct 465656 GGCTGCAA 465649 Score = 114 bits (126), Expect = 2e-20 Identities = 102/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 10840 CTTACGGGTCGAACAGTGCCGATCATAAAACCCCGTCCGCGTACAATCGCACCAATAACG 10899 |||||| || | |||| | ||||||||||||||| ||| || |||||| || || Sbjct 474248 CTTACGCGTTGTGCAGTTCTCCCCATAAAACCCCGTCCTCGTGCAGTCGCACTCGTATCG 474189 Query 10900 ATCAAACCCCACCGTCATGCATACCCCTCGATTCTGGCACGGGTGCGAACAGCAAGGGTT 10959 ||| || ||| | |||||||||||||| | ||||||||||||| || ||||||||||| Sbjct 474188 ATCGAATCCCGCGGTCATGCATACCCCCCTGTTCTGGCACGGGTTTGAGCAGCAAGGGTT 474129 Query 10960 GGCTGCAA 10967 |||||||| Sbjct 474128 GGCTGCAA 474121 Score = 98.7 bits (108), Expect = 1e-15 Identities = 163/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 9493 ATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCA 9552 ||||| |||||||| | ||| || | |||| |||| | |||| ||| ||||| Sbjct 478189 ATGGAGTTGTTGTAGAGGAACTGCTGGTAAGTGTACTCCTGGTCGTGTATCTGAAAAGTG 478130 Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 || |||| || | |||||| |||| || |||||||| || || || || ||||||||| Sbjct 478129 TCTGGCAGAAGCGGGTGCCAGTGGTACAGAGTATTGAATTCAGCTGCAATGCGGTTCTGG 478070 Query 9613 TACTGAAAG-GC-GGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670 || |||||| || ||| ||||| | ||| || ||||| | || | ||||||||| | Sbjct 478069 TATTGAAAGCGCTGGT--TGAACAACAGCTCGGGATCAAACTTCAGTTTGAAGTGGTAGC 478012 Query 9671 CGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCCGGT 9722 | || || || || || || | | || | ||| || || || || || || Sbjct 478011 CACTCAGATGTTGTACGTAGTCTTCAATAACAATCTTGATCGTCTCTCCTGT 477960 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 10389 ACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTATA 10448 |||||| || || | || || ||||||||| | || || ||||| |||| || || Sbjct 457698 ACCTTTAACACCCATTGGTGTTGGGCAGTCATGTCCTACTGGTGGCAGGCTTCTTGTGTA 457639 Query 10449 ATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGCGG 10508 |||||| ||||| ||| | ||||||||||| |||||| ||| || |||||| || Sbjct 457638 ATAGGAGAGATTGGAATAGGCTTCCCAGCTTTTGTAGTTATAGTCACTGTTGTAAGTTGG 457579 Query 10509 GGGACTGTCAATCA 10522 || |||||||||| Sbjct 457578 TGGGCTGTCAATCA 457565 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 10389 ACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTATA 10448 |||||| || || | || || ||||||||| | || || ||||| |||| || || Sbjct 466643 ACCTTTAACACCCATTGGTGTTGGGCAGTCATGTCCTACTGGTGGCAGGCTTCTTGTGTA 466584 Query 10449 ATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGCGG 10508 |||||| ||||| ||| | ||||||||||| |||||| ||| || |||||| || Sbjct 466583 ATAGGAGAGATTGGAATAGGCTTCCCAGCTTTTGTAGTTATAGTCACTGTTGTAAGTTGG 466524 Query 10509 GGGACTGTCAATCA 10522 || |||||||||| Sbjct 466523 TGGGCTGTCAATCA 466510 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 10389 ACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTATA 10448 |||||| || || | || || ||||||||| | || || ||||| |||| || || Sbjct 475115 ACCTTTAACACCCATTGGTGTTGGGCAGTCATGTCCTACTGGTGGCAGGCTTCTTGTGTA 475056 Query 10449 ATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGCGG 10508 |||||| ||||| ||| | ||||||||||| |||||| ||| || |||||| || Sbjct 475055 ATAGGAGAGATTGGAATAGGCTTCCCAGCTTTTGTAGTTATAGTCACTGTTGTAAGTTGG 474996 Query 10509 GGGACTGTCAATCA 10522 || |||||||||| Sbjct 474995 TGGGCTGTCAATCA 474982 >seq669 Length=1422838 Score = 114 bits (126), Expect = 2e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 8966 CCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGCCCT 9025 ||||| || |||||||||||||||||| | |||||||||||| ||| | | ||||| Sbjct 421557 CCGCCAAACGTGCTGGGTTTCCAGTACTCGGGGGAGCAGATGGGGTTTCCGAGAAGCCCC 421498 Query 9026 TTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGACGC 9085 |||| |||||||||||| || | ||| | ||||| || || || | | | |||| | Sbjct 421497 TTCAGGGAAAACGGAGCTCCAATCTCCACCATGCTTTCCCCAAAAAGTGAATCGGGCTGG 421438 Query 9086 GGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCT 9145 ||||| || | | ||||| ||| | || | || |||| ||| ||||| || || Sbjct 421437 GGTTTCTCAAGCAGCAAGCCCACGTAAAACTCCAGGGCATCGATGTCTCCATACAGCTCT 421378 Query 9146 TCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178 |||| ||| || || |||| | ||| ||| || Sbjct 421377 TCCAGCTCTGCTGCCTTCTCTTCCTCTCCTGCA 421345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 720771317815200