Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015 -06-23] 326,828 sequences; 1,595,295,449 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq285 127 5e-24 seq511 122 2e-22 seq266184 86.0 1e-11 >seq285 Length=3013400 Score = 127 bits (140), Expect = 5e-24 Identities = 160/219 (73%), Gaps = 3/219 (1%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| |||||||| ||||| |||||||| |||| ||||||||||| | || | |||||| Sbjct 2914818 CAGCACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGTCCATC 2914759 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| || | |||||| || ||| ||| ||||| || Sbjct 2914758 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGAGGAATGCCTTCCTTGTC 2914699 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || || || ||| || || | |||||| | | || || |||| ||||| || Sbjct 2914698 TTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGT 2914639 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 ||| ||||| | || |||||||| || || |||||| Sbjct 2914638 CTTCCCCGTCAAGGTCTTCACAAAGATCTG---CATTTT 2914603 Score = 127 bits (140), Expect = 5e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| |||||||| ||||| |||||||| |||| ||||||||||| | || | |||||| Sbjct 2917763 CAGCACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGTCCATC 2917704 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| || | |||||| || ||| ||| ||||| || Sbjct 2917703 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGAGGAATGCCTTCCTTGTC 2917644 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || || || ||| || || | |||||| | | || || |||| ||||| || Sbjct 2917643 TTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGT 2917584 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || || |||||||| || || Sbjct 2917583 CTTCCCTGTCAGGGTCTTCACAAAGATCTG 2917554 Score = 118 bits (130), Expect = 2e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| ||||| || || || || ||||| |||| ||||||||| | ||| || | ||||| Sbjct 2917991 CAGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGCCCATC 2917932 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| || | |||||| || || ||| |||||| || Sbjct 2917931 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCTTTGTC 2917872 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || ||||| ||| || || | |||||| | | || || |||| ||||| || Sbjct 2917871 TTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGT 2917812 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || || |||||||| || || Sbjct 2917811 CTTCCCTGTCAGGGTCTTCACAAAGATCTG 2917782 >seq511 Length=1428375 Score = 122 bits (134), Expect = 2e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| |||||||| || || |||||||| |||| ||||||||||| || || | ||||| Sbjct 1121394 CAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 1121335 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| ||||||||||| || || || || || || Sbjct 1121334 TTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGGGGGATGCCCTCCTTGTC 1121275 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| || || | |||||| | | || || || | ||||| || Sbjct 1121274 CTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCGACCTCAAGGGTGATGGT 1121215 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || || |||||||| || || Sbjct 1121214 CTTGCCAGTCAGGGTCTTCACAAAGATCTG 1121185 Score = 113 bits (124), Expect = 1e-19 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| |||||||| || || |||||||| |||| ||||||||| | || || | ||||| Sbjct 1121622 CAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATC 1121563 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| ||||||||||| || || || || || || Sbjct 1121562 TTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGGGGGATGCCCTCCTTGTC 1121503 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| || || | |||||| | | || || || | ||||| || Sbjct 1121502 CTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGT 1121443 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || | || |||||||| || || Sbjct 1121442 CTTGCCAGTCAAGGTCTTCACAAAGATCTG 1121413 Score = 113 bits (124), Expect = 1e-19 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| |||||||| || || |||||||| |||| ||||||||| | || || | ||||| Sbjct 1121850 CAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATC 1121791 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| ||||||||||| || || || || || || Sbjct 1121790 TTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGGGGGATGCCCTCCTTGTC 1121731 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| || || | |||||| | | || || || | ||||| || Sbjct 1121730 CTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGT 1121671 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || | || |||||||| || || Sbjct 1121670 CTTGCCAGTCAAGGTCTTCACAAAGATCTG 1121641 Score = 113 bits (124), Expect = 1e-19 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| |||||||| || || |||||||| |||| ||||||||| | || || | ||||| Sbjct 1122078 CAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATC 1122019 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| ||||||||||| || || || || || || Sbjct 1122018 TTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGGGGGATGCCCTCCTTGTC 1121959 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| || || | |||||| | | || || || | ||||| || Sbjct 1121958 CTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGT 1121899 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || | || |||||||| || || Sbjct 1121898 CTTGCCAGTCAAGGTCTTCACAAAGATCTG 1121869 Score = 113 bits (124), Expect = 1e-19 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| |||||||| || || |||||||| |||| ||||||||| | || || | ||||| Sbjct 1122306 CAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATC 1122247 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| ||||||||||| || || || || || || Sbjct 1122246 TTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGGGGGATGCCCTCCTTGTC 1122187 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| || || | |||||| | | || || || | ||||| || Sbjct 1122186 CTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGT 1122127 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || | || |||||||| || || Sbjct 1122126 CTTGCCAGTCAAGGTCTTCACAAAGATCTG 1122097 Score = 113 bits (124), Expect = 1e-19 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| |||||||| || || |||||||| |||| ||||||||| | || || | ||||| Sbjct 1122534 CAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATC 1122475 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| ||||||||||| || || || || || || Sbjct 1122474 TTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGGGGGATGCCCTCCTTGTC 1122415 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| || || | |||||| | | || || || | ||||| || Sbjct 1122414 CTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGT 1122355 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || | || |||||||| || || Sbjct 1122354 CTTGCCAGTCAAGGTCTTCACAAAGATCTG 1122325 >seq266184 Length=251 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 199445 TGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGA 199504 |||| ||||||||||| ||| || || || ||||||| ||||| || || ||||| | Sbjct 1 TGGATGTTGTAGTCAGACAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAAT 60 Query 199505 CGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACG 199564 | || ||||| || || ||||| || ||||||||| ||| || || | Sbjct 61 CTTTGTTGGTCAGGTGGGATACCTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATA 120 Query 199565 GTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATT 199624 ||||| | | ||| || |||| || || |||||||| || | ||| || || |||||| Sbjct 121 GTGTCAGAAGATTCAACTTCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATT 180 Query 199625 TG 199626 || Sbjct 181 TG 182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1173984884957476