Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015 -06-23] 326,828 sequences; 1,595,295,449 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq511 150 2e-31 seq285 127 2e-24 >seq511 Length=1428375 Score = 150 bits (166), Expect = 2e-31 Identities = 175/236 (74%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | ||||| ||| || |||| || |||||| ||||| |||||||| | Sbjct 1121410 TGCCACCCCTCAGACGCAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 1121351 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || |||||| | || || ||||||||||| || || |||| |||||||| || | | Sbjct 1121350 ACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGGG 1121291 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || |||||||||| |||||| ||||| || | | |||||||| | || | Sbjct 1121290 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCGA 1121231 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGCAC 46600 | || | |||||||| ||||| ||||| || || |||||||| ||||| ||| || Sbjct 1121230 CCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTTGAAC 1121175 Score = 147 bits (162), Expect = 2e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | ||||| ||| || |||| || |||||| ||||| |||||||||| Sbjct 1121638 TGCCACCCCTCAGACGCAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 1121579 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || |||||| | || || ||||||||||| || || |||| |||||||| || | | Sbjct 1121578 ACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGGG 1121519 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || |||||||||| |||||| ||||| || | | |||||||| | || | Sbjct 1121518 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCAA 1121459 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | |||||||| ||||| |||| || || |||||||| ||||| Sbjct 1121458 CCTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 1121410 Score = 147 bits (162), Expect = 2e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | ||||| ||| || |||| || |||||| ||||| |||||||||| Sbjct 1121866 TGCCACCCCTCAGACGCAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 1121807 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || |||||| | || || ||||||||||| || || |||| |||||||| || | | Sbjct 1121806 ACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGGG 1121747 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || |||||||||| |||||| ||||| || | | |||||||| | || | Sbjct 1121746 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCAA 1121687 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | |||||||| ||||| |||| || || |||||||| ||||| Sbjct 1121686 CCTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 1121638 Score = 147 bits (162), Expect = 2e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | ||||| ||| || |||| || |||||| ||||| |||||||||| Sbjct 1122094 TGCCACCCCTCAGACGCAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 1122035 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || |||||| | || || ||||||||||| || || |||| |||||||| || | | Sbjct 1122034 ACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGGG 1121975 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || |||||||||| |||||| ||||| || | | |||||||| | || | Sbjct 1121974 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCAA 1121915 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | |||||||| ||||| |||| || || |||||||| ||||| Sbjct 1121914 CCTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 1121866 Score = 147 bits (162), Expect = 2e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | ||||| ||| || |||| || |||||| ||||| |||||||||| Sbjct 1122322 TGCCACCCCTCAGACGCAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 1122263 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || |||||| | || || ||||||||||| || || |||| |||||||| || | | Sbjct 1122262 ACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGGG 1122203 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || |||||||||| |||||| ||||| || | | |||||||| | || | Sbjct 1122202 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCAA 1122143 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | |||||||| ||||| |||| || || |||||||| ||||| Sbjct 1122142 CCTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 1122094 Score = 145 bits (160), Expect = 9e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 ||| || || | ||||| ||| || |||| || |||||| ||||| ||||||||||| Sbjct 1122549 GCCACCCCTCAGACGCAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 1122490 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 || |||||| | || || ||||||||||| || || |||| |||||||| || | || Sbjct 1122489 CAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGGGG 1122430 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545 | || |||||||||| |||||| ||||| || | | |||||||| | || || Sbjct 1122429 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCAAC 1122370 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | |||||||| ||||| |||| || || |||||||| ||||| Sbjct 1122369 CTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 1122322 >seq285 Length=3013400 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 46364 TTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCG 46423 ||||| || || | ||||| ||| ||||||| || ||||| ||||| ||||||||| Sbjct 2918008 TTGCCACCCCTCAGACGCAGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCG 2917949 Query 46424 GATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCC 46483 || | |||||| | || || ||||||||||| || || |||| | |||||| || | Sbjct 2917948 GACAAGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGG 2917889 Query 46484 GGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCC 46543 || | || || ||||| |||||| ||||| || | | ||||| || | || Sbjct 2917888 GGAATGCCTTCTTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCA 2917829 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| |||||||| || || ||||| || || |||||||| ||||| Sbjct 2917828 ACCTCCAGGGTGATGGTCTTCCCTGTCAGGGTCTTCACAAAGATCTGCAT 2917779 Score = 125 bits (138), Expect = 8e-24 Identities = 167/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | ||||| ||| || |||| || |||||| ||||| |||||||| | Sbjct 2914834 TGCCACCCCTCAGACGCAGCACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAG 2914775 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || ||||||||||| || || |||| | |||||| || | | Sbjct 2914774 AGAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGAG 2914715 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || |||||||| ||| || ||||| || | | ||||| || | || | Sbjct 2914714 GAATGCCTTCCTTGTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAA 2914655 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 | |||| |||||||| || ||||||| || || |||||||| |||||||| Sbjct 2914654 CCTCCAGGGTGATGGTCTTCCCCGTCAAGGTCTTCACAAAGATCTGCATTTT 2914603 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | ||||| ||| || |||| || |||||| ||||| |||||||| | Sbjct 2917779 TGCCACCCCTCAGACGCAGCACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAG 2917720 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || ||||||||||| || || |||| | |||||| || | | Sbjct 2917719 AGAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGAG 2917660 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || |||||||| ||| || ||||| || | | ||||| || | || | Sbjct 2917659 GAATGCCTTCCTTGTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAA 2917600 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| |||||||| || || ||||| || || |||||||| ||||| Sbjct 2917599 CCTCCAGGGTGATGGTCTTCCCTGTCAGGGTCTTCACAAAGATCTGCAT 2917551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562929203302560