Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015 -06-23] 326,828 sequences; 1,595,295,449 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq294479 123 1e-22 seq283712 104 9e-17 seq198 104 9e-17 seq215564 98.7 4e-15 seq194436 98.7 4e-15 seq240174 91.5 6e-13 seq288 86.0 2e-11 seq36 84.2 9e-11 >seq294479 Length=371 Score = 123 bits (136), Expect = 1e-22 Identities = 229/333 (69%), Gaps = 6/333 (2%) Strand=Plus/Minus Query 451273 TAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTAC 451332 ||| ||||| ||||| || ||| || | ||| | || | ||| || || | || Sbjct 359 TAAGATGAAGGAAACTGCCGAATCTTACTTGGGTGCCAAGGTCAATGACGCTGTCGTCAC 300 Query 451333 TGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGC 451392 ||| || ||||| ||||| ||| | ||| | ||||| || || ||||| || ||||| Sbjct 299 TGTCCCAGCTTACTTCAACGATTCTCAAAGACAAGCTACCAAGGATGCTGGTACCATTGC 240 Query 451393 TGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACT 451452 |||||| ||||| | || |||||||| |||||||| || ||||| | || || || | Sbjct 239 TGGTTTGAATGTCTTGCGTATTATTAACGAACCTACCGCCGCTGCCATTGCTTACGG-TT 181 Query 451453 AGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAAC 451512 ||| || || | | | ||| || | | || | || || || ||||| || || Sbjct 180 TGGACAA-GAAGGGTA----AGGAAGAACACGTCTTGATTTTCGACTTGGGTGGTGGTAC 126 Query 451513 TCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGG 451572 | ||| ||| | | || |||||||| || | |||||||| ||||| ||| ||| Sbjct 125 TTTCGATGTCTCTTTGTTGTCCATTGAAGACGGTATCTTTGAAGTTAAGGCCACCGCTGG 66 Query 451573 TGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 ||| || ||| | || ||||||||| |||| || Sbjct 65 TGACACCCATTTGGGTGGTGAAGATTTTGACAA 33 >seq283712 Length=310 Score = 104 bits (114), Expect = 9e-17 Identities = 185/267 (69%), Gaps = 11/267 (4%) Strand=Plus/Minus Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379 |||| || | || ||||| ||||| ||||||||||| ||| | ||||| |||||||| | Sbjct 257 ATGCTGTTGTCACCGTTCCTGCTTACTTCAATGATGCCCAAAGACAAGCTACTAAAGACG 198 Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439 |||| || |||| |||||| || ||| | || | | |||||||| || || ||||| Sbjct 197 CAGGCCAAATTGTTGGTTTGAACGTTTTACGTGTCGTCAATGAACCAACCGCCGCTGCCT 138 Query 451440 TAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATT 451499 |||| || || | ||||| || | || ||| | || || || |||| Sbjct 137 TAGCTTACGG-TTTGGAAA--------AATCCGACTCTAAAGTTGTTGCCGTTTTCGATT 87 Query 451500 TTGGTGGAGGAACTCATGATACTTCTGTACTTTCA-ATTGAAGATGGGGTATTTGAAGTA 451558 | ||||| || ||| |||| || | ||| | ||||| | || || |||||||| Sbjct 86 TGGGTGGTGGTACTTTCGATATCTCCAT-CTTAGATATTGACAACGGTGTTTTTGAAGTT 28 Query 451559 AAGGCAACCAATGGTGATACTCATCTA 451585 ||| | || || ||||| |||||| || Sbjct 27 AAGTCCACTAACGGTGACACTCATTTA 1 >seq198 Length=34638458 Score = 104 bits (114), Expect = 9e-17 Identities = 287/435 (66%), Gaps = 9/435 (2%) Strand=Plus/Minus Query 451177 TGTAGTAAATCAAAAAGGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAAC 451236 ||| || ||| ||| || ||||| | | ||||| | || || ||||| | || || Sbjct 32771433 TGTGGTGAATGAAAGTGGCAAGCCAAAGGTGCAAGTGGAGTACAAGGGTGAGATGAAGAC 32771374 Query 451237 TTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACA 451296 || || || || || || ||||| ||||| |||||||| || | || || Sbjct 32771373 CTTCTTCCCAGAGGAGATCAGCTCCATGGTACTTACCAAAATGAAGGAGATTGCTGAGGC 32771314 Query 451297 ATATATTGGTTCTCCAGTTACTGA-TGCAGTAATTACTGTTCCCGCTTATTTCAATGATG 451355 ||| | || | | || | | || ||| || || || || || ||||| ||||| || Sbjct 32771313 TTATCTGGGC-CGCAAGGTGCAGAATGCTGTTATCACAGTGCCTGCTTACTTCAACGACT 32771255 Query 451356 CACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTA 451415 | || || || || || |||||||| || || |||| | ||||| | || || | Sbjct 32771254 CCCAGCGCCAGGCCACCAAAGATGCTGGTACCATCACTGGCCTTAATGTGATGCGCATCA 32771195 Query 451416 TTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAA-----AC 451470 | ||||| || |||||||||||| |||| ||||| || ||| || ||| | | | Sbjct 32771194 TCAATGAGCCCACAGCAGCTGCTATAGCGTATGG-CTTGGACAA-GAAAGGTACCCGGGC 32771137 Query 451471 AGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACT 451530 | |||||| ||| | | | ||||| || || || || ||| ||| || | || Sbjct 32771136 TGGAGAAAAGAATGTGCTCATCTTTGACTTGGGAGGGGGCACTTTCGATGTGTCCATCCT 32771077 Query 451531 TTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGG 451590 | ||||| ||||| | |||||||| ||| | || |||||||| ||||| || || Sbjct 32771076 CACCATTGAGGATGGCATCTTTGAAGTGAAGTCCACAGCCGGTGATACCCATCTGGGTGG 32771017 Query 451591 TGAAGATATTGATAA 451605 || || |||| || Sbjct 32771016 GGAGGACTTTGACAA 32771002 Score = 89.7 bits (98), Expect = 2e-12 Identities = 117/158 (74%), Gaps = 12/158 (8%) Strand=Plus/Minus Query 451982 AAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCTA 452041 |||||| | ||||| |||||||||||||| ||||| ||||| || ||||||||||| || Sbjct 32770625 AAGAGCATCAATCCAGATGAAGCTGTTGCTTATGGCGCTGCTGTGCAAGCAGCTATCCTC 32770566 Query 452042 ACAGGTTCAGATGA---TGAAAAATT--AGGAGATATT-CTGTTAGTAGATGTAACACCT 452095 | || ||| | ||| || | |||| | || |||| | ||||| || ||| Sbjct 32770565 ATGGG---AGACAAGTCTGAGAACGTGCAGGATCTGTTGCTGT---TGGATGTCACCCCT 32770512 Query 452096 CTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGAC 452133 || || || || |||| |||||||||||| ||||||| Sbjct 32770511 CTGTCCCTGGGCATTGAGACAGCTGGTGGAGTGATGAC 32770474 >seq215564 Length=174 Score = 98.7 bits (108), Expect = 4e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 452402 ATTACAATTACTAATGATAAAAACCGTTTATCTAAAGAAGATATTGAAAAAATGGTAGAT 452461 |||||||||||||| ||||| | ||||| || |||||||| || |||||||| | | Sbjct 173 ATTACAATTACTAACGATAAGGGAAGATTATCGAAGGAAGATATCGATAAAATGGTTGCT 114 Query 452462 GAAGCAGAAAAATTCAAGGATGATGATGAACAAGTTAGAAAACATGTTGAAGCTAAAAAC 452521 || |||||||| ||||||| || |||||||||| ||| |||| ||||||| || Sbjct 113 GAGGCAGAAAAGTTCAAGGCCGAAGATGAACAAGAAGCTCAACGTGTTCAAGCTAAGAAT 54 Query 452522 AAACTAGAA 452530 | |||||| Sbjct 53 CAGCTAGAA 45 >seq194436 Length=156 Score = 98.7 bits (108), Expect = 4e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 ||||| |||| || |||||||||| |||||||||||||| || ||| | ||||| || Sbjct 33 GTTACCCATGCTGTCGTTACTGTTCCTGCTTATTTCAATGACGCGCAAAGACAAGCCACC 92 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 || ||||| || || |||||||| || ||| | ||||| |||||||||| || ||| Sbjct 93 AAGGATGCTGGTACCATCGCTGGTTTGAACGTTTTGAGAATTGTTAATGAACCAACCGCA 152 Query 451433 GC 451434 || Sbjct 153 GC 154 >seq240174 Length=202 Score = 91.5 bits (100), Expect = 6e-13 Identities = 139/195 (71%), Gaps = 5/195 (3%) Strand=Plus/Minus Query 451388 ATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATAT 451447 || || || || || |||||||| || ||||||||||||||||| || ||| | || ||| Sbjct 200 ATCGCGGGCTTGAACGTTCTTCGTATCATTAATGAACCTACAGCTGCCGCTATTGCGTAT 141 Query 451448 GGACTAGGAAAATCAAAAGAAACAGAA-GaaaaaaaTATTTTAGTATTTGATTTTGGTGG 451506 || || ||| || || | ||||| || | || | || | |||||||| ||||| Sbjct 140 GGGCT-GGACAAGAAATCG---CAGAAGGAGCACAACGTCTTGATCTTTGATTTAGGTGG 85 Query 451507 AGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAAC 451566 || ||| |||| ||| | || || || || || || || ||||| || ||||| || Sbjct 84 TGGTACTTTTGATGTCTCTCTGCTATCCATAGATGAAGGTGTCTTTGAGGTTAAGGCTAC 25 Query 451567 CAATGGTGATACTCA 451581 |||||| ||||| Sbjct 24 TGCTGGTGACACTCA 10 >seq288 Length=1751179 Score = 86.0 bits (94), Expect = 2e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 ||||| |||| || | ||||| || || ||||||||||| | || || || || || Sbjct 747832 GTTACAAATGCTGTTGTCACTGTACCAGCCTATTTCAATGACTCCCAGCGCCAGGCTACA 747773 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 || ||||| ||| ||||| || | ||||| || |||||||| ||||| || || || Sbjct 747772 AAGGATGCTGGAACCATTGCAGGGCTCAATGTACTCCGAATTATCAATGAGCCAACTGCT 747713 Query 451433 GCTGCTCTAGCATATGGACT 451452 |||||| | || ||||| || Sbjct 747712 GCTGCTATTGCCTATGGTCT 747693 >seq36 Length=1690443 Score = 84.2 bits (92), Expect = 9e-11 Identities = 83/107 (78%), Gaps = 3/107 (3%) Strand=Plus/Plus Query 451190 AAAGGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAA---ACTAAAACTTTTGCTCCT 451246 |||| ||||| |||||||||| || | |||| | || ||||| ||||||||| Sbjct 1399008 AAAGCCAAGCCTCATATTCAAGTTGATGTTGGTGGTGGACAGACAAAAACATTTGCTCCT 1399067 Query 451247 GAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGA 451293 ||||||||||| |||||||| | || || ||||||||||| ||||| Sbjct 1399068 GAAGAAATTTCTGCTATGGTTTTGACAAAGATGAAAGAAACTGCAGA 1399114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1967445111305424