Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015 -06-23] 326,828 sequences; 1,595,295,449 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq3026 100 4e-16 seq293287 91.5 2e-13 >seq3026 Length=70695 Score = 100 bits (110), Expect = 4e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 112278 TGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGAC 112337 ||| | ||||| || | || || || |||||||| || || || ||||| ||||||||| Sbjct 56881 TGGTATGCTATCATCGAATCCCAGACAGAGACTGGCACCCCTTACATGCTCTACAAAGAC 56940 Query 112338 GCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGT 112397 |||| |||| ||||| ||||| |||| ||||| ||||| | |||||||||| Sbjct 56941 TCCTGCAACCGGAAGAGCAATCAGCAGAACTTGGGGACCATCAAATGCAGCAACCTCTGT 57000 Query 112398 ACAGAAATCTTGGAATTTACAGACAAAGATGAG 112430 || ||||| |||| | ||| |||||||||| Sbjct 57001 ACGGAAATAGTGGAGTATACCAGCAAAGATGAG 57033 >seq293287 Length=363 Score = 91.5 bits (100), Expect = 2e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 163546 CTATGGGCGTGTTGCGCCACGATCTGGTCTCGCTGTGAAACACGGTATCCAAGTTGGTGC 163605 ||| || ||| |||||||| | || || || || |||||| ||||||||||| ||||| Sbjct 178 CTACGGTCGTATTGCGCCAAGGTCAGGCCTGGCAGTGAAAAACGGTATCCAAACCGGTGC 119 Query 163606 GGGTGTTATTGATCCCGACTACACGGGTGAAGTCAAAGTCGTTCTCTTCAATCAT 163660 |||||| | || || ||||| |||||||| ||||| ||| | ||||||||| Sbjct 118 TGGTGTTGTCGACAGAGATTACACCGGTGAAGTTAAAGTAGTTTTATTCAATCAT 64 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618206450036160