Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015 -06-23] 326,828 sequences; 1,595,295,449 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq95 129 7e-25 seq212 116 4e-21 seq3026 95.1 1e-14 >seq95 Length=9561987 Score = 129 bits (142), Expect = 7e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| |||||||| || | |||||||||||| || | |||||||| | ||||||||| | Sbjct 3110867 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 3110808 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||| || || || |||||||| ||||||||||| || ||||| ||||||||||||| Sbjct 3110807 TCAGCCAAAAAATTGATGCAAATGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 3110748 Query 19103 CAACTAGTCTTTCTCC 19118 | | || | |||||| Sbjct 3110747 CTATTACACGTTCTCC 3110732 Score = 98.7 bits (108), Expect = 1e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 19215 CTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATT 19274 ||| | || |||||||| |||| || || | | |||||||||||||||||| ||||| Sbjct 3108671 CTCTTTTGAATCTTTAATGTATGTGTCAATTAGAAGACTGTACATTTCTGAATGTATATT 3108612 Query 19275 TTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328 ||| || || ||||| || || || ||||| | |||||||| ||||||||||| Sbjct 3108611 TTCCATGGCAATCTGGAAGCCATAGAAACAACGGGCTTCTGTGATCTGTACTTC 3108558 >seq212 Length=4710727 Score = 116 bits (128), Expect = 4e-21 Identities = 100/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | ||||||||| || || || ||||||||||| || || || | Sbjct 4384856 CCTCATCTCTGCTAATAAGTTCATTAGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 4384915 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||||| |||||| || || |||||||| || ||||| ||||| ||||| | Sbjct 4384916 TCAGCCAGAATATAGCAGCAAAGGAACCCGAAAAGAAGATTCCTTCAACTGCAGCAAAGG 4384975 Query 19103 CAAC 19106 |||| Sbjct 4384976 CAAC 4384979 >seq3026 Length=70695 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| |||||||| ||||| || || | ||| || | ||||||| ||| || || | Sbjct 63914 TCCACCCATAGAAGTGCATGCTGGTGAGTTTGCCGTAGTTGGGTTCTGCAATGTGGATGT 63855 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | ||||| || ||||||||||| || || ||||| || |||||||| | | ||| | Sbjct 63854 TGAGAGACTGGCTCTGATCAATGAAAGCTCCTCTGTCTGCTGCCATCTTGAGGATAGTCT 63795 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTT 47206 | || | |||||||| ||||| ||||| | ||| || Sbjct 63794 TCTGGGAGATCTCCCACACTGTCTTATAGAGTTGCTT 63758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559812388813920