Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015
-06-23] 326,828 sequences; 1,595,295,449 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq288 123 2e-22
seq198 107 2e-17
seq200685 95.1 1e-13
seq266184 89.7 4e-12
seq36 86.0 5e-11
>seq288
Length=1751179
Score = 123 bits (136), Expect = 2e-22
Identities = 115/146 (79%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450
||||| |||| || | ||||||||||| ||||| |||||||| || || || |||||
Sbjct 747832 GTTACAAATGCTGTTGTCACTGTACCAGCCTATTTCAATGACTCCCAGCGCCAGGCTACA 747773
Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510
|| ||||||||| ||||| || || ||||| || || ||||||||||| || ||||||
Sbjct 747772 AAGGATGCTGGAACCATTGCAGGGCTCAATGTACTCCGAATTATCAATGAGCCAACTGCT 747713
Query 550511 GCTGCACTTGCATATGGACTTGATAA 550536
||||| |||| ||||| || || ||
Sbjct 747712 GCTGCTATTGCCTATGGTCTGGACAA 747687
Score = 111 bits (122), Expect = 1e-18
Identities = 154/214 (72%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 549970 AGATATAATGTCAAACAAAGTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGT 550029
||| | |||||| || | |||| | || || ||| | || ||||| ||| ||||||
Sbjct 748888 AGACAAAATGTCGAAGGGACCAGCTGTCGGAATTGATCTTGGCACCACCTATTCTTGTGT 748829
Query 550030 TGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTAC 550089
|||||| | ||| |||| || || ||||| |||||||||||||| |||||| | || ||
Sbjct 748828 TGGTGTATTCCAACATGGGAAGGTGGAAATCATTGCCAATGATCAGGGTAACCGGACCAC 748769
Query 550090 TCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCA 550149
||| || ||| | ||||| || || ||| || |||||||||| ||||| | ||
Sbjct 748768 GCCAAGCTACGTTGCCTTCACAGACACAGAAAGGTTGATTGGTGATGCTGCAAAGAACCA 748709
Query 550150 AG--CCACTGGTAATCCTACCAATACTATTTTTG 550181
|| || || ||||| ||||| || | ||||
Sbjct 748708 AGTTGCAATG--AATCCAACCAACACAGTCTTTG 748677
>seq198
Length=34638458
Score = 107 bits (118), Expect = 2e-17
Identities = 353/546 (65%), Gaps = 11/546 (2%)
Strand=Plus/Minus
Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051
|| || || || || || || || |||||| || || ||||| | || |||| |||
Sbjct 32771696 GCAATCGGCATCGACTTGGGCACTACATATTCCTGCGTGGGTGTCTTCCAGCATGGCAAA 32771637
Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111
|| || || ||||||||||| || || ||| | || || || ||||| | |||||
Sbjct 32771636 GTGGAGATCATTGCCAATGACCAGGGCAACCGCACCACACCCAGCTATGTGGCCTTCACT 32771577
Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171
|| || || | | | | |||||||| || || | || | || || || |||||
Sbjct 32771576 GATACCGAGCGTCTCATCGGTGATGCTGCCAAGAACCAGGTGGCTATGAACCCCACCAAC 32771517
Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231
|| || || ||||| || ||| | || || | | | | |||| | || || ||| ||
Sbjct 32771516 ACCATCTTCGATGCCAAGCGTCTCATCGGCCGCAAGTATGATGACCCCACAGTGCAGTCA 32771457
Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG-- 550289
|| |||||||| ||||| |||| | || |||| ||| || || | | |||
Sbjct 32771456 GACATGAAGCACTGGCCCTTCCGTGTGGTGAATGAAAGTGGCAAGCCAAAGGTGCAAGTG 32771397
Query 550290 --CTACTCATGAAGGATCTGTTAAACA-ATTTTCACCAGAACAAATTTCATCTATGGTTT 550346
||| |||| | | | || | || | ||||| | || || |||||
Sbjct 32771396 GAGTAC-----AAGGGTGAGATGAAGACCTTCTTCCCAGAGGAGATCAGCTCCATGGTAC 32771342
Query 550347 TAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAA 550406
| | |||||||| | | || |||| | | || | | || | |||| || |
Sbjct 32771341 TTACCAAAATGAAGGAGATTGCTGAGGCTTATCTGGGCCGCAAGGTGCAGAATGCTGTTA 32771282
Query 550407 TAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTA 550466
| || || || || || || || ||||| || || || || || ||||||||||| |
Sbjct 32771281 TCACAGTGCCTGCTTACTTCAACGACTCCCAGCGCCAGGCCACCAAAGATGCTGGTACCA 32771222
Query 550467 TTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATG 550526
| |||| |||||||| | || || |||||||| || || || ||||| | || ||||
Sbjct 32771221 TCACTGGCCTTAATGTGATGCGCATCATCAATGAGCCCACAGCAGCTGCTATAGCGTATG 32771162
Query 550527 GACTTG 550532
| ||||
Sbjct 32771161 G-CTTG 32771157
>seq200685
Length=161
Score = 95.1 bits (104), Expect = 1e-13
Identities = 117/160 (73%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 424033 AACAAGCAAATCTTTTATCAAAAATTGAGAAGTTATTAGTCTTCCTCTATTATGCATAAA 424092
|| || ||||||||| | |||||||||||| || | ||| | ||||||||||||
Sbjct 1 AATAAACAAATCTTTAGTTAAAAATTGAGAAACTACCATTCTCATGCGATTATGCATAAA 60
Query 424093 TCCAGTTGTATTTAACTCGCGCATGGCGGCATCTACAATTGGAAATCCAGTGCATCCATT 424152
||||||||| || | || ||| || ||||| | ||||||||| ||||| ||||
Sbjct 61 TCCAGTTGTTTTAAGTTCCTCCATTGCTGCATCAATAATTGGAAAACCAGTATTCCCATC 120
Query 424153 TTTCCATGCTTCAAAATACTTTTTATTATTTTCCCATTTC 424192
|||||| || ||||| || || ||||| |||||||
Sbjct 121 TTTCCACAGTTTAAAATTCTCTTCATTATAAGACCATTTC 160
>seq266184
Length=251
Score = 89.7 bits (98), Expect = 4e-12
Identities = 131/183 (72%), Gaps = 2/183 (1%)
Strand=Plus/Plus
Query 563293 ATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTT 563352
|| ||||| |||| | ||||| ||||| | ||| || || ||||| || | ||||
Sbjct 4 ATGTTGTAGTCAGACAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTT 63
Query 563353 TGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTA 563412
|| || ||||| || || ||||| || |||||||| ||| || || ||||| ||
Sbjct 64 TGTTGGTCAGGTGGGATACCTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTG 123
Query 563413 TCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTG 563471
|||| || | | ||| || |||| ||| ||||| || | ||| || |||||||||||
Sbjct 124 TCAGAA-GATTCAACTTCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTG 182
Query 563472 CAT 563474
|||
Sbjct 183 CAT 185
>seq36
Length=1690443
Score = 86.0 bits (94), Expect = 5e-11
Identities = 83/107 (78%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 552468 ACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGT 552527
|| ||||||||| ||| || || |||||| || | || ||||||||||||||||||
Sbjct 1401341 ACCAAAGATAATCATCTCCTGGGAACTTTTGATCTGACGGGAATTCCTCCTGCTCCTCGT 1401400
Query 552528 GGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAAT 552574
|| || || || ||||||||||| || || || |||| ||||| ||
Sbjct 1401401 GGTGTCCCACAGATTGAAGTTACCTTTGAAATAGATGTGAATGGGAT 1401447
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4012011861365720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |