Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015 -06-23] 326,828 sequences; 1,595,295,449 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq288 123 2e-22 seq198 107 2e-17 seq200685 95.1 1e-13 seq266184 89.7 4e-12 seq36 86.0 5e-11 >seq288 Length=1751179 Score = 123 bits (136), Expect = 2e-22 Identities = 115/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||| || | ||||||||||| ||||| |||||||| || || || ||||| Sbjct 747832 GTTACAAATGCTGTTGTCACTGTACCAGCCTATTTCAATGACTCCCAGCGCCAGGCTACA 747773 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 || ||||||||| ||||| || || ||||| || || ||||||||||| || |||||| Sbjct 747772 AAGGATGCTGGAACCATTGCAGGGCTCAATGTACTCCGAATTATCAATGAGCCAACTGCT 747713 Query 550511 GCTGCACTTGCATATGGACTTGATAA 550536 ||||| |||| ||||| || || || Sbjct 747712 GCTGCTATTGCCTATGGTCTGGACAA 747687 Score = 111 bits (122), Expect = 1e-18 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 549970 AGATATAATGTCAAACAAAGTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGT 550029 ||| | |||||| || | |||| | || || ||| | || ||||| ||| |||||| Sbjct 748888 AGACAAAATGTCGAAGGGACCAGCTGTCGGAATTGATCTTGGCACCACCTATTCTTGTGT 748829 Query 550030 TGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTAC 550089 |||||| | ||| |||| || || ||||| |||||||||||||| |||||| | || || Sbjct 748828 TGGTGTATTCCAACATGGGAAGGTGGAAATCATTGCCAATGATCAGGGTAACCGGACCAC 748769 Query 550090 TCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCA 550149 ||| || ||| | ||||| || || ||| || |||||||||| ||||| | || Sbjct 748768 GCCAAGCTACGTTGCCTTCACAGACACAGAAAGGTTGATTGGTGATGCTGCAAAGAACCA 748709 Query 550150 AG--CCACTGGTAATCCTACCAATACTATTTTTG 550181 || || || ||||| ||||| || | |||| Sbjct 748708 AGTTGCAATG--AATCCAACCAACACAGTCTTTG 748677 >seq198 Length=34638458 Score = 107 bits (118), Expect = 2e-17 Identities = 353/546 (65%), Gaps = 11/546 (2%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || || || || || || || || |||||| || || ||||| | || |||| ||| Sbjct 32771696 GCAATCGGCATCGACTTGGGCACTACATATTCCTGCGTGGGTGTCTTCCAGCATGGCAAA 32771637 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || || ||||||||||| || || ||| | || || || ||||| | ||||| Sbjct 32771636 GTGGAGATCATTGCCAATGACCAGGGCAACCGCACCACACCCAGCTATGTGGCCTTCACT 32771577 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || || | | | | |||||||| || || | || | || || || ||||| Sbjct 32771576 GATACCGAGCGTCTCATCGGTGATGCTGCCAAGAACCAGGTGGCTATGAACCCCACCAAC 32771517 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || || || ||||| || ||| | || || | | | | |||| | || || ||| || Sbjct 32771516 ACCATCTTCGATGCCAAGCGTCTCATCGGCCGCAAGTATGATGACCCCACAGTGCAGTCA 32771457 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG-- 550289 || |||||||| ||||| |||| | || |||| ||| || || | | ||| Sbjct 32771456 GACATGAAGCACTGGCCCTTCCGTGTGGTGAATGAAAGTGGCAAGCCAAAGGTGCAAGTG 32771397 Query 550290 --CTACTCATGAAGGATCTGTTAAACA-ATTTTCACCAGAACAAATTTCATCTATGGTTT 550346 ||| |||| | | | || | || | ||||| | || || ||||| Sbjct 32771396 GAGTAC-----AAGGGTGAGATGAAGACCTTCTTCCCAGAGGAGATCAGCTCCATGGTAC 32771342 Query 550347 TAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAA 550406 | | |||||||| | | || |||| | | || | | || | |||| || | Sbjct 32771341 TTACCAAAATGAAGGAGATTGCTGAGGCTTATCTGGGCCGCAAGGTGCAGAATGCTGTTA 32771282 Query 550407 TAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTA 550466 | || || || || || || || ||||| || || || || || ||||||||||| | Sbjct 32771281 TCACAGTGCCTGCTTACTTCAACGACTCCCAGCGCCAGGCCACCAAAGATGCTGGTACCA 32771222 Query 550467 TTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATG 550526 | |||| |||||||| | || || |||||||| || || || ||||| | || |||| Sbjct 32771221 TCACTGGCCTTAATGTGATGCGCATCATCAATGAGCCCACAGCAGCTGCTATAGCGTATG 32771162 Query 550527 GACTTG 550532 | |||| Sbjct 32771161 G-CTTG 32771157 >seq200685 Length=161 Score = 95.1 bits (104), Expect = 1e-13 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 424033 AACAAGCAAATCTTTTATCAAAAATTGAGAAGTTATTAGTCTTCCTCTATTATGCATAAA 424092 || || ||||||||| | |||||||||||| || | ||| | |||||||||||| Sbjct 1 AATAAACAAATCTTTAGTTAAAAATTGAGAAACTACCATTCTCATGCGATTATGCATAAA 60 Query 424093 TCCAGTTGTATTTAACTCGCGCATGGCGGCATCTACAATTGGAAATCCAGTGCATCCATT 424152 ||||||||| || | || ||| || ||||| | ||||||||| ||||| |||| Sbjct 61 TCCAGTTGTTTTAAGTTCCTCCATTGCTGCATCAATAATTGGAAAACCAGTATTCCCATC 120 Query 424153 TTTCCATGCTTCAAAATACTTTTTATTATTTTCCCATTTC 424192 |||||| || ||||| || || ||||| ||||||| Sbjct 121 TTTCCACAGTTTAAAATTCTCTTCATTATAAGACCATTTC 160 >seq266184 Length=251 Score = 89.7 bits (98), Expect = 4e-12 Identities = 131/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 563293 ATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTT 563352 || ||||| |||| | ||||| ||||| | ||| || || ||||| || | |||| Sbjct 4 ATGTTGTAGTCAGACAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTT 63 Query 563353 TGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTA 563412 || || ||||| || || ||||| || |||||||| ||| || || ||||| || Sbjct 64 TGTTGGTCAGGTGGGATACCTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTG 123 Query 563413 TCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTG 563471 |||| || | | ||| || |||| ||| ||||| || | ||| || ||||||||||| Sbjct 124 TCAGAA-GATTCAACTTCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTG 182 Query 563472 CAT 563474 ||| Sbjct 183 CAT 185 >seq36 Length=1690443 Score = 86.0 bits (94), Expect = 5e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 552468 ACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGT 552527 || ||||||||| ||| || || |||||| || | || |||||||||||||||||| Sbjct 1401341 ACCAAAGATAATCATCTCCTGGGAACTTTTGATCTGACGGGAATTCCTCCTGCTCCTCGT 1401400 Query 552528 GGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAAT 552574 || || || || ||||||||||| || || || |||| ||||| || Sbjct 1401401 GGTGTCCCACAGATTGAAGTTACCTTTGAAATAGATGTGAATGGGAT 1401447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4012011861365720