Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015 -06-23] 326,828 sequences; 1,595,295,449 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq266184 118 8e-22 seq285 102 6e-17 >seq266184 Length=251 Score = 118 bits (130), Expect = 8e-22 Identities = 137/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 101285 TGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAA 101344 || || ||||| || | | ||||| | || |||||||||||||| ||||| ||||| Sbjct 1 TGGATGTTGTAGTCAGACAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAAT 60 Query 101345 CGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACA 101404 | ||||| || || || || ||||| || |||||||| ||| || ||| | || | | Sbjct 61 CTTTGTTGGTCAGGTGGGATACCTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATA 120 Query 101405 GTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATC 101464 |||||||| | ||| ||||| || || | || || ||||||||||| || || || || Sbjct 121 GTGTCAGAAGATTCAACTTCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATT 180 Query 101465 TGCAT 101469 ||||| Sbjct 181 TGCAT 185 >seq285 Length=3013400 Score = 102 bits (112), Expect = 6e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 101240 TTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCG 101299 || || || || | ||| | || | ||| ||||| ||||| || || || ||||| ||| Sbjct 2918008 TTGCCACCCCTCAGACGCAGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCG 2917949 Query 101300 GCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGC 101359 | | || | |||| |||| ||||| || ||||| |||| | ||| ||||| || Sbjct 2917948 GACAAGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGG 2917889 Query 101360 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCC 101419 |||||||||||||| ||||| || || || ||| | || | |||||| | || Sbjct 2917888 GGAATGCCTTCTTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCA 2917829 Query 101420 ACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || || |||| || || || || | || || ||||| ||||||||| Sbjct 2917828 ACCTCCAGGGTGATGGTCTTCCCTGTCAGGGTCTTCACAAAGATCTGCATG 2917778 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || || || || || || ||||| || | || || | |||| |||| ||| Sbjct 2914808 TGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGTCCATCTTCCAGCTGC 2914749 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| |||| | ||| ||||| || ||||||||||| || ||||| ||||| Sbjct 2914748 TTGCCAGCAAAGATCAGCCTCTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGGATTTTG 2914689 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | |||||| | || || || || |||| || || || || Sbjct 2914688 GCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTCCCCGTC 2914629 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 || || || ||||| |||||||| Sbjct 2914628 AAGGTCTTCACAAAGATCTGCAT 2914606 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || || || || || || ||||| || | || || | |||| |||| ||| Sbjct 2917753 TGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGTCCATCTTCCAGCTGC 2917694 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| |||| | ||| ||||| || ||||||||||| || ||||| ||||| Sbjct 2917693 TTGCCAGCAAAGATCAGCCTCTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGGATTTTG 2917634 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | |||||| | || || || || |||| || || || || Sbjct 2917633 GCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTCCCTGTC 2917574 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| |||||||| Sbjct 2917573 AGGGTCTTCACAAAGATCTGCAT 2917551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394699937437596