Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015 -06-23] 326,828 sequences; 1,595,295,449 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq2849 246 3e-60 >seq2849 Length=1082 Score = 246 bits (272), Expect = 3e-60 Identities = 172/196 (88%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 3160 GTACAGAAAGAGGTTTATATTAAACTGTTACATTGCAAACGTGGTGTCGTGTATCAAATG 3219 |||||| |||||||||||| ||||||||||||||||||||||||| |||||| ||| || Sbjct 905 GTACAGGAAGAGGTTTATACTAAACTGTTACATTGCAAACGTGGTTTCGTGTGCCAAGTG 846 Query 3220 TCAAAACCGCTGTTTAATAGATGCATTGACCCACTTTTACAATCACGACTCTAAATGTGT 3279 | ||||||| |||||||| | || |||| || || ||||| |||||||| || ||||| Sbjct 845 TGAAAACCGATGTTTAATCAAGGCTCTGACGCATTTCTACAACCACGACTCCAAGTGTGT 786 Query 3280 GGGCGAAATCATGCATCTGTTAATCAAATCGCAAGATGTGTATAAACCGCCAAACTGCCA 3339 ||| ||| |||||||||| ||||||||||| ||||||||||||||||| ||||||||||| Sbjct 785 GGGTGAAGTCATGCATCTTTTAATCAAATCCCAAGATGTGTATAAACCACCAAACTGCCA 726 Query 3340 AAAAATGAAAACTGTC 3355 |||||||||||||||| Sbjct 725 AAAAATGAAAACTGTC 710 Score = 107 bits (118), Expect = 2e-18 Identities = 83/98 (85%), Gaps = 3/98 (3%) Strand=Plus/Minus Query 2935 TTCCGGACTCAGATTATACATGCTGTTAACGGCTTTGCCGACTATTAGCGAAATTAAAAA 2994 ||||||||| |||| |||||||||||||||||| ||| ||||||| ||||||||| Sbjct 1077 TTCCGGACTGCGATTGTACATGCTGTTAACGGCTCCGCCCACTATTAATGAAATTAAA-- 1020 Query 2995 TAATTCTAATTTTAAAAAACGAAGCAAGAAAAATATTT 3032 ||||| |||||||||||||| ||||||| ||| |||| Sbjct 1019 -AATTCCAATTTTAAAAAACGCAGCAAGAGAAACATTT 983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423710320687812