Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015 -06-23] 326,828 sequences; 1,595,295,449 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq266184 131 1e-24 seq288 114 8e-20 seq294479 102 5e-16 seq36 91.5 1e-12 seq629 89.7 3e-12 seq264600 87.8 1e-11 seq285 87.8 1e-11 seq194436 86.0 4e-11 >seq266184 Length=251 Score = 131 bits (144), Expect = 1e-24 Identities = 120/152 (79%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 ||||| | |||||| |||||||| || | | |||||| ||||| || || ||||||||| Sbjct 31 TCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTTG 90 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737 |||||||||||| |||||| |||||||| |||| | | ||| ||||||||| Sbjct 91 TCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCCAGGGTAATA 150 Query 480738 GTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || |||||||| | |||||| ||||||||||| Sbjct 151 GTCTTACCGGTTAAAGTCTTGACGAAAATTTG 182 >seq288 Length=1751179 Score = 114 bits (126), Expect = 8e-20 Identities = 223/327 (68%), Gaps = 2/327 (1%) Strand=Plus/Minus Query 475496 ACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTT 475555 ||||| ||||||||||| ||||| | || ||||| ||||| | | | ||||| || Sbjct 747343 ACTGCATGTGAACGTGCAAAGCGTACCCTCTCTTCGAGCACTCAGGCCAGTATTGAAATT 747284 Query 475556 GATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGAT 475615 |||||||| | ||| || ||||| | | || ||||| || ||| |||||||| Sbjct 747283 GATTCTCTCTATGAGGGTATTGACTTCTACACATCGATTACCAGAGCTCGCTTTGAAGAG 747224 Query 475616 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCT 475675 | | |||| || || | || | || || || ||| ||| ||| | ||| || Sbjct 747223 CTGAATGCTGACCTGTTCCGTGGCACCCTGGATCCTGTGGAAAAAGCTCTGCGGGATGCT 747164 Query 475676 AAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCA 475735 ||| | ||||||||||| ||||||| || || | || || || || || | || ||| Sbjct 747163 AAATTAGACAAATCACAGATCCATGACATCGTGTTGGTTGGTGGGTCTACTCGTATCCCA 747104 Query 475736 AAAATAAGAGAAATGCTTTCATCATAT-TTTAATGGTAAAAAGTTAAATGAAAGTGTAAA 475794 || || ||||| | || || | || ||||| ||| |||| || | || | || Sbjct 747103 AAGAT-TCAGAAACTTCTACAGGATTTCTTCAATGGCAAAGAGTTGAACAAGAGCATCAA 747045 Query 475795 TCCTGATGAAGCTGTTGCATATGGAGC 475821 ||||||||||||||| || || || || Sbjct 747044 TCCTGATGAAGCTGTGGCTTACGGTGC 747018 Score = 95.1 bits (104), Expect = 8e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 476032 TGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGG 476091 |||||| ||| || | ||||| || || ||| || || | ||| | || || Sbjct 745973 TGAAGGGGAACGAGCTATGACTAAGGACAACAACTTGCTGGGCAAGTTTGAGCTGACTGG 745914 Query 476092 TATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAA 476151 |||||| ||||| |||||||| || ||||| |||||||| || |||||||||||||| || Sbjct 745913 TATTCCCCCTGCACCCAGAGGTGTACCTCAGATTGAAGTAACCTTTGATATTGATGCCAA 745854 Query 476152 TGGTATTCTTAATGTTACTGCTTGTGATAA 476181 ||| || || ||||| ||||| ||||| Sbjct 745853 TGGCATCCTGAATGTGTCTGCTGTGGATAA 745824 Score = 95.1 bits (104), Expect = 8e-14 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 474518 GATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATGCGT 474577 ||||| ||| | |||||||| |||| || |||||| | |||||| || |||||| Sbjct 748135 GATGCAAAACGGTTGATTGGGCGTAGATTCGATGATTCTGTTGTCCAGTCGGATATGAAG 748076 Query 474578 CATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATAT--AGAAGCAATACACG 474635 || |||||||| | ||| | |||| || ||||| ||| | | || | | |||| Sbjct 748075 CACTGGCCTTTCACCGTGGTGAATGATGCTGGTAGACCGAAAGTCCAGGTGGAGTACAA- 748017 Query 474636 CAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGA 474695 ||| || || || || | || ||| |||||||||||||||||||| ||||||||| Sbjct 748016 -AGGAGAGACCAAGAGCTTCTACCCAGAAGAAATTTCTTCAATGGTTTTAACCAAAATGA 747958 Query 474696 AACAAACCGCGAGCTCATATCTTGG 474720 | ||| || |||||||||| Sbjct 747957 AGGAAATTGCAGAAGCATATCTTGG 747933 >seq294479 Length=371 Score = 102 bits (112), Expect = 5e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 474733 TGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGA 474792 ||| || || | ||||| ||||| || || || ||||||||| | ||||| || || || Sbjct 314 TGACGCTGTCGTCACTGTCCCAGCTTACTTCAACGATTCTCAAAGACAAGCTACCAAGGA 255 Query 474793 TGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGC 474852 ||| || | ||||| ||| | ||||| || ||||||||||| ||||| || || || || Sbjct 254 TGCTGGTACCATTGCTGGTTTGAATGTCTTGCGTATTATTAACGAACCTACCGCCGCTGC 195 Query 474853 ACTTGCTTATGGTCTTGATAAGAA 474876 ||||||| ||| | || ||||| Sbjct 194 CATTGCTTACGGTTTGGACAAGAA 171 >seq36 Length=1690443 Score = 91.5 bits (100), Expect = 1e-12 Identities = 196/292 (67%), Gaps = 6/292 (2%) Strand=Plus/Plus Query 476051 ACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGA 476110 || ||||||||| | || ||||||||| |||| || |||||||||||||| | Sbjct 1401341 ACCAAAGATAATCATCTCCTGGGAACTTTTGATCTGACGGGAATTCCTCCTGCTCCTCGT 1401400 Query 476111 GGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACT 476170 || || || || ||||||||||| ||||| || |||| ||||| || || |||||| Sbjct 1401401 GGTGTCCCACAGATTGAAGTTACCTTTGAAATAGATGTGAATGGGATCCTCCGTGTTACA 1401460 Query 476171 GCTTGTGATAA---ATCTAGTAACAAGAGTAAAAATATAACTATTACAAACAATCGTGGT 476227 ||| || || || | ||||| || || || || |||||||| ||| | Sbjct 1401461 GCTGAAGACAAGGGCACTGGGAACAA---AAACAAGATCACAATTACAAATGATCAGAAT 1401517 Query 476228 AGATTTACTGAAGAACAAATTCAACGTATGGTTGATGAAGCCAAAGAGTTTGAAGAAGCT 476287 | | || |||| | ||| | | |||||| |||| || | |||||| || | Sbjct 1401518 CGGCTGACACCAGAAGAGATTGAGAGAATGGTTAATGATGCTGAGAAGTTTGCTGAGGAA 1401577 Query 476288 GATAACAAGAGAAAAGCTGCTATTGATGCAAAGAATGAACTTGAAAATTATG 476339 || || ||| |||| ||||||||| | |||||| | |||| |||| Sbjct 1401578 GACAAGAAGCTTAAAGAACGTATTGATGCCAGGAATGAGTTGGAAAGCTATG 1401629 >seq629 Length=1324259 Score = 89.7 bits (98), Expect = 3e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 627769 CCATCACGTCCTGCTCTACCTATTTCTTGATAATAACCTTCGATATTTTTAGGTGCGCCA 627828 |||||||| || ||||| || |||||||||||||| ||| || | ||||| || ||| Sbjct 163480 CCATCACGACCAGCTCTCCCAATTTCTTGATAATAGGATTCCATTTCCTTAGGGGCACCA 163539 Query 627829 TAATGTATTACTGCTCTCACATCTGATTTATTAATACCCATTCCAAATGCAATTGTTGCA 627888 ||||| || || | | ||||| |||||| || |||||||||||||| | ||| || Sbjct 163540 TAATGAATAACCTTCCGGATATCTGCTTTATTGATGCCCATTCCAAATGCCACTGTAGCT 163599 Query 627889 AC 627890 || Sbjct 163600 AC 163601 >seq264600 Length=247 Score = 87.8 bits (96), Expect = 1e-11 Identities = 150/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 475793 AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGT--- 475849 || || |||||||||||||| || || |||||||| ||||| |||||||| | ||| Sbjct 35 AACCCAGATGAAGCTGTTGCTTACGGTGCTGCTGTTCAAGCTGCTATTTTGACTGGTGAC 94 Query 475850 CAATCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGT 475909 |||| | ||| | | || |||||| ||| || || ||||| | || || ||| Sbjct 95 GAATCTTCCAAGACTCAAGAT-CTATTGTTGTTG--GATGTCGCTCCATTATCCTTGGGT 151 Query 475910 CTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGC 475969 ||||||| | ||| || | ||||| || | ||| ||||| || | || ||| Sbjct 152 ATTGAAACTGCTGGTGGTGTCATGACCAAGTTGATTCCAAGAAACTCTACCATTCCAACT 211 Query 475970 AAAAAATCAAAAGTATTTTCCACTTATTCTGATAA 476004 || ||||| |||| || || |||||| |||| || Sbjct 212 AAGAAATCCGAAGTTTTCTCTACTTATGCTGACAA 246 >seq285 Length=3013400 Score = 87.8 bits (96), Expect = 1e-11 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| || ||||| |||||||| || || | || ||||| |||||||| |||||||| Sbjct 2917706 ATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGAGGAATGCCTTCCTT 2917647 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 |||||| || || |||||| ||||| || ||| || | | || ||||| || Sbjct 2917646 GTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGAT 2917587 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || ||||| || || || || Sbjct 2917586 GGTCTTCCCTGTCAGGGTCTTCACAAAGATCTG 2917554 >seq194436 Length=156 Score = 86.0 bits (94), Expect = 4e-11 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || |||||||||| || ||||| ||||| | ||| | ||||| || || |||| Sbjct 40 ATGCTGTCGTTACTGTTCCTGCTTATTTCAATGACGCGCAAAGACAAGCCACCAAGGATG 99 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCG 474851 | || | || || ||| | || ||||| | ||| ||||||||||||| ||||||| Sbjct 100 CTGGTACCATCGCTGGTTTGAACGTTTTGAGAATTGTTAATGAACCAACCGCAGCCG 156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3254159961310544