Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015
-06-23] 326,828 sequences; 1,595,295,449 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq266184 131 1e-24
seq288 114 8e-20
seq294479 102 5e-16
seq36 91.5 1e-12
seq629 89.7 3e-12
seq264600 87.8 1e-11
seq285 87.8 1e-11
seq194436 86.0 4e-11
>seq266184
Length=251
Score = 131 bits (144), Expect = 1e-24
Identities = 120/152 (79%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677
||||| | |||||| |||||||| || | | |||||| ||||| || || |||||||||
Sbjct 31 TCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTTG 90
Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737
|||||||||||| |||||| |||||||| |||| | | ||| |||||||||
Sbjct 91 TCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCCAGGGTAATA 150
Query 480738 GTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| |||||||| | |||||| |||||||||||
Sbjct 151 GTCTTACCGGTTAAAGTCTTGACGAAAATTTG 182
>seq288
Length=1751179
Score = 114 bits (126), Expect = 8e-20
Identities = 223/327 (68%), Gaps = 2/327 (1%)
Strand=Plus/Minus
Query 475496 ACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTT 475555
||||| ||||||||||| ||||| | || ||||| ||||| | | | ||||| ||
Sbjct 747343 ACTGCATGTGAACGTGCAAAGCGTACCCTCTCTTCGAGCACTCAGGCCAGTATTGAAATT 747284
Query 475556 GATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGAT 475615
|||||||| | ||| || ||||| | | || ||||| || ||| ||||||||
Sbjct 747283 GATTCTCTCTATGAGGGTATTGACTTCTACACATCGATTACCAGAGCTCGCTTTGAAGAG 747224
Query 475616 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCT 475675
| | |||| || || | || | || || || ||| ||| ||| | ||| ||
Sbjct 747223 CTGAATGCTGACCTGTTCCGTGGCACCCTGGATCCTGTGGAAAAAGCTCTGCGGGATGCT 747164
Query 475676 AAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCA 475735
||| | ||||||||||| ||||||| || || | || || || || || | || |||
Sbjct 747163 AAATTAGACAAATCACAGATCCATGACATCGTGTTGGTTGGTGGGTCTACTCGTATCCCA 747104
Query 475736 AAAATAAGAGAAATGCTTTCATCATAT-TTTAATGGTAAAAAGTTAAATGAAAGTGTAAA 475794
|| || ||||| | || || | || ||||| ||| |||| || | || | ||
Sbjct 747103 AAGAT-TCAGAAACTTCTACAGGATTTCTTCAATGGCAAAGAGTTGAACAAGAGCATCAA 747045
Query 475795 TCCTGATGAAGCTGTTGCATATGGAGC 475821
||||||||||||||| || || || ||
Sbjct 747044 TCCTGATGAAGCTGTGGCTTACGGTGC 747018
Score = 95.1 bits (104), Expect = 8e-14
Identities = 111/150 (74%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 476032 TGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGG 476091
|||||| ||| || | ||||| || || ||| || || | ||| | || ||
Sbjct 745973 TGAAGGGGAACGAGCTATGACTAAGGACAACAACTTGCTGGGCAAGTTTGAGCTGACTGG 745914
Query 476092 TATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAA 476151
|||||| ||||| |||||||| || ||||| |||||||| || |||||||||||||| ||
Sbjct 745913 TATTCCCCCTGCACCCAGAGGTGTACCTCAGATTGAAGTAACCTTTGATATTGATGCCAA 745854
Query 476152 TGGTATTCTTAATGTTACTGCTTGTGATAA 476181
||| || || ||||| ||||| |||||
Sbjct 745853 TGGCATCCTGAATGTGTCTGCTGTGGATAA 745824
Score = 95.1 bits (104), Expect = 8e-14
Identities = 145/205 (71%), Gaps = 4/205 (2%)
Strand=Plus/Minus
Query 474518 GATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATGCGT 474577
||||| ||| | |||||||| |||| || |||||| | |||||| || ||||||
Sbjct 748135 GATGCAAAACGGTTGATTGGGCGTAGATTCGATGATTCTGTTGTCCAGTCGGATATGAAG 748076
Query 474578 CATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATAT--AGAAGCAATACACG 474635
|| |||||||| | ||| | |||| || ||||| ||| | | || | | ||||
Sbjct 748075 CACTGGCCTTTCACCGTGGTGAATGATGCTGGTAGACCGAAAGTCCAGGTGGAGTACAA- 748017
Query 474636 CAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGA 474695
||| || || || || | || ||| |||||||||||||||||||| |||||||||
Sbjct 748016 -AGGAGAGACCAAGAGCTTCTACCCAGAAGAAATTTCTTCAATGGTTTTAACCAAAATGA 747958
Query 474696 AACAAACCGCGAGCTCATATCTTGG 474720
| ||| || ||||||||||
Sbjct 747957 AGGAAATTGCAGAAGCATATCTTGG 747933
>seq294479
Length=371
Score = 102 bits (112), Expect = 5e-16
Identities = 109/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 474733 TGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGA 474792
||| || || | ||||| ||||| || || || ||||||||| | ||||| || || ||
Sbjct 314 TGACGCTGTCGTCACTGTCCCAGCTTACTTCAACGATTCTCAAAGACAAGCTACCAAGGA 255
Query 474793 TGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGC 474852
||| || | ||||| ||| | ||||| || ||||||||||| ||||| || || || ||
Sbjct 254 TGCTGGTACCATTGCTGGTTTGAATGTCTTGCGTATTATTAACGAACCTACCGCCGCTGC 195
Query 474853 ACTTGCTTATGGTCTTGATAAGAA 474876
||||||| ||| | || |||||
Sbjct 194 CATTGCTTACGGTTTGGACAAGAA 171
>seq36
Length=1690443
Score = 91.5 bits (100), Expect = 1e-12
Identities = 196/292 (67%), Gaps = 6/292 (2%)
Strand=Plus/Plus
Query 476051 ACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGA 476110
|| ||||||||| | || ||||||||| |||| || |||||||||||||| |
Sbjct 1401341 ACCAAAGATAATCATCTCCTGGGAACTTTTGATCTGACGGGAATTCCTCCTGCTCCTCGT 1401400
Query 476111 GGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACT 476170
|| || || || ||||||||||| ||||| || |||| ||||| || || ||||||
Sbjct 1401401 GGTGTCCCACAGATTGAAGTTACCTTTGAAATAGATGTGAATGGGATCCTCCGTGTTACA 1401460
Query 476171 GCTTGTGATAA---ATCTAGTAACAAGAGTAAAAATATAACTATTACAAACAATCGTGGT 476227
||| || || || | ||||| || || || || |||||||| ||| |
Sbjct 1401461 GCTGAAGACAAGGGCACTGGGAACAA---AAACAAGATCACAATTACAAATGATCAGAAT 1401517
Query 476228 AGATTTACTGAAGAACAAATTCAACGTATGGTTGATGAAGCCAAAGAGTTTGAAGAAGCT 476287
| | || |||| | ||| | | |||||| |||| || | |||||| || |
Sbjct 1401518 CGGCTGACACCAGAAGAGATTGAGAGAATGGTTAATGATGCTGAGAAGTTTGCTGAGGAA 1401577
Query 476288 GATAACAAGAGAAAAGCTGCTATTGATGCAAAGAATGAACTTGAAAATTATG 476339
|| || ||| |||| ||||||||| | |||||| | |||| ||||
Sbjct 1401578 GACAAGAAGCTTAAAGAACGTATTGATGCCAGGAATGAGTTGGAAAGCTATG 1401629
>seq629
Length=1324259
Score = 89.7 bits (98), Expect = 3e-12
Identities = 93/122 (76%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 627769 CCATCACGTCCTGCTCTACCTATTTCTTGATAATAACCTTCGATATTTTTAGGTGCGCCA 627828
|||||||| || ||||| || |||||||||||||| ||| || | ||||| || |||
Sbjct 163480 CCATCACGACCAGCTCTCCCAATTTCTTGATAATAGGATTCCATTTCCTTAGGGGCACCA 163539
Query 627829 TAATGTATTACTGCTCTCACATCTGATTTATTAATACCCATTCCAAATGCAATTGTTGCA 627888
||||| || || | | ||||| |||||| || |||||||||||||| | ||| ||
Sbjct 163540 TAATGAATAACCTTCCGGATATCTGCTTTATTGATGCCCATTCCAAATGCCACTGTAGCT 163599
Query 627889 AC 627890
||
Sbjct 163600 AC 163601
>seq264600
Length=247
Score = 87.8 bits (96), Expect = 1e-11
Identities = 150/215 (70%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 475793 AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGT--- 475849
|| || |||||||||||||| || || |||||||| ||||| |||||||| | |||
Sbjct 35 AACCCAGATGAAGCTGTTGCTTACGGTGCTGCTGTTCAAGCTGCTATTTTGACTGGTGAC 94
Query 475850 CAATCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGT 475909
|||| | ||| | | || |||||| ||| || || ||||| | || || |||
Sbjct 95 GAATCTTCCAAGACTCAAGAT-CTATTGTTGTTG--GATGTCGCTCCATTATCCTTGGGT 151
Query 475910 CTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGC 475969
||||||| | ||| || | ||||| || | ||| ||||| || | || |||
Sbjct 152 ATTGAAACTGCTGGTGGTGTCATGACCAAGTTGATTCCAAGAAACTCTACCATTCCAACT 211
Query 475970 AAAAAATCAAAAGTATTTTCCACTTATTCTGATAA 476004
|| ||||| |||| || || |||||| |||| ||
Sbjct 212 AAGAAATCCGAAGTTTTCTCTACTTATGCTGACAA 246
>seq285
Length=3013400
Score = 87.8 bits (96), Expect = 1e-11
Identities = 111/153 (73%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676
|||||| || ||||| |||||||| || || | || ||||| |||||||| ||||||||
Sbjct 2917706 ATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGAGGAATGCCTTCCTT 2917647
Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736
|||||| || || |||||| ||||| || ||| || | | || ||||| ||
Sbjct 2917646 GTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGAT 2917587
Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| || || || || ||||| || || || ||
Sbjct 2917586 GGTCTTCCCTGTCAGGGTCTTCACAAAGATCTG 2917554
>seq194436
Length=156
Score = 86.0 bits (94), Expect = 4e-11
Identities = 89/117 (76%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794
|||| || |||||||||| || ||||| ||||| | ||| | ||||| || || ||||
Sbjct 40 ATGCTGTCGTTACTGTTCCTGCTTATTTCAATGACGCGCAAAGACAAGCCACCAAGGATG 99
Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCG 474851
| || | || || ||| | || ||||| | ||| ||||||||||||| |||||||
Sbjct 100 CTGGTACCATCGCTGGTTTGAACGTTTTGAGAATTGTTAATGAACCAACCGCAGCCG 156
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3254159961310544
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |