Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015
-06-23] 326,828 sequences; 1,595,295,449 total letters
Query= NC_020474.2
Length=180421
Score E
Sequences producing significant alignments: (Bits) Value
seq3428 251 8e-62
seq9585 176 5e-39
seq63 154 2e-32
>seq3428
Length=205224
Score = 251 bits (278), Expect = 8e-62
Identities = 607/910 (67%), Gaps = 9/910 (1%)
Strand=Plus/Plus
Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104
||||||||| || || |||| |||| || || || |||||| || ||||| |
Sbjct 31636 TGTGTCGCAAATACTCTTCCAAGCATTTCACAGCAAAAGGGTCAACATCAGTATCGAACT 31695
Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164
|||| || || | ||||| ||| | | ||||||| || |||||| | || || |
Sbjct 31696 TATTAGCAAAGAAGTGGTG---GTTTCGCAACATCCAGTTCAAGTCTCCTGCTCCAAAAA 31752
Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224
||||||| || || | ||| | || |||| || ||||| | || ||||| | |||||
Sbjct 31753 CGCAGACAGAGCGAACGTGAATCCCACTGCATGGTGGGTAGGGCGCACCTTTAGACACGT 31812
Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284
| ||||| ||||||||||||||||||||||||| | ||| | |||||| || ||
Sbjct 31813 CGCCTTCAAAGTACTGCCACTTCACAAACCTGGCCAGCGCATTCATGTCAGAAACATCAA 31872
Query 160285 ATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACA 160344
| || | | | ||| ||||| || || | || || | ||| | || |||||||
Sbjct 31873 ACTTATTACTGGAAGAAACTGCACCTGGGACTTCAGGGATTCTCTGAATTGTTGCCCACA 31932
Query 160345 GGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGT 160404
||| || || |||||||| ||||| || | ||| || || || |||| ||||
Sbjct 31933 GGTACTCATCAGGGCTGTAAGTGTCTTTTGCCCACTCAATAAATGAAAGGATTTTGCTGT 31992
Query 160405 CCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATA 160464
|| | ||| || | |||| | | |||||| || || || || || || |
Sbjct 31993 TTTCTAGTATGTGTCCTACAAATCTTCTGCTAATGACAAAATAGGCACTACCAGAAAAAA 32052
Query 160465 TCGGTATGGGTATAGGCGG-CGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTC 160523
| || | | ||| || ||| | |||||| || ||||| || || |
Sbjct 32053 TTGGAGTACTGAGAGGTGGTCGT-TGTTTGTCTATGCCTGTGTTCTTTACTTTACCATCA 32111
Query 160524 ACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCG-GTGGCATGCGTTCCGTCTC 160582
| | | | || |||| |||||||| || |||| | | | ||||| |||||| ||
Sbjct 32112 ATAATCTCATGGTGCTTTTTCCACCTTACT-TCTTTAGAGAGAGGCATTTTTTCCGTTTC 32170
Query 160583 TAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAG 160642
| || || |||| | || | ||||||| || || || || |||| ||||| |
Sbjct 32171 CAAGCTATTTTCACCTTTAAGGGCTTTCAGCCTCTCTACTATTTCCTGGTTGGTCTTAAT 32230
Query 160643 CGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAG 160702
|||||||| | || || | |||||| | ||| ||||| |||| || || ||
Sbjct 32231 AGGAAAGTCCATGCCACAAAGGTTTATTAAGTATTTCCACTTCGTACTTCTTCTGTAGAG 32290
Query 160703 GTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTC 160762
||| ||||||| ||||| ||||||||||| | |||||| ||||| || || || ||||
Sbjct 32291 GTCTTTCATGCAGTTAATGTCTGCCTGCACCCTGCTCCATGAAGCATATACAACACTCTC 32350
Query 160763 TAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAA 160822
|| | |||| | |||||| ||||| ||||| || || |||||| ||| | ||| ||
Sbjct 32351 TAACTGGCTGGAAATAAAGACATTATCAAAACATGAAACTATTCCCTTCACAG-CAGCAA 32409
Query 160823 GAACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGA 160881
|| || | | |||| ||| || || | ||| || | |||||||| || ||||
Sbjct 32410 AAAAGGATTCTGGAGACTTTTTGTCAACATGAATGCAGTAAAAATTCTGAGGAGCATAGA 32469
Query 160882 TGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTA 160941
| | || || | || || | |||||| || || |||| | ||| || ||||| || |
Sbjct 32470 TTGATCTTAGAAGTCTATCAAGCATCTCAATTTTGTGATAAACCACTATGGAGTAAGCAA 32529
Query 160942 TCGGAAACTC 160951
| ||||| ||
Sbjct 32530 TTGGAAATTC 32539
>seq9585
Length=150949
Score = 176 bits (194), Expect = 5e-39
Identities = 591/911 (65%), Gaps = 18/911 (2%)
Strand=Plus/Minus
Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104
||||| ||| || || || | |||| || || || |||||| || ||||| |
Sbjct 123492 TGTGTTGCAAATACTCTTCTAAGCATTTCACAGCAAAAGGGTCAACATCAGTATCGAACT 123433
Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164
|||| || || | ||||| ||| | || ||||||| || |||||| || ||||
Sbjct 123432 TATTAGCAAAGAAGTGGTG---GTTTCGCAGCATCCAGTTCAAGTCTCCTACTCCAAACA 123376
Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224
| ||||| || || | ||| | || |||| || ||||| | || ||||| | ||| |
Sbjct 123375 CACAGACAGAGCGAACGTGAATCCCACTGCATGGTGGGTAGGGCGCACCTTTAGACACAT 123316
Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284
||||||| |||||||||||||||||||||||| | ||| | |||||| || || |
Sbjct 123315 CACCTTCAAAGTACTGCCACTTCACAAACCTGGTCAGCGCATTCATGTCAGAAACATCAT 123256
Query 160285 ATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACA 160344
| || | | | ||| ||||| | || | || || | ||| | || |||||||
Sbjct 123255 ACTTATTACTGGAAGAAACTGCACCCAGGACTTCAGGGATTCTCTGAATTGTTGCCCACA 123196
Query 160345 GGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGT 160404
||| || || ||||| || ||||| || | ||| || || || |||| || |
Sbjct 123195 GGTACTCATCAGGGCTCTAAGTGTCTTTTGCCCACTCAATAAATGAAAGGATTTTGCTAT 123136
Query 160405 CCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATA 160464
| | ||| || || || | |||||||| || || || || || || |
Sbjct 123135 TTTCTAATATGTGTTCTAC---AAATTTGCTAACGACAAAATAGGCACTACCAGAAAAAA 123079
Query 160465 TCGGTATGGGTATAGGCGG-CGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTC 160523
| || | | ||| || ||| | |||||| || ||||| |||| |
Sbjct 123078 TTGGAGTACTGAGAGGTGGTCGT-TGTTTGTCTATGCCTGTGTTCTTTACCA-----TCA 123025
Query 160524 ACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCG-GTGGCATGCGTTCCGTCTC 160582
| | | | || |||| |||||||| | | |||| | | | ||||| ||| || ||
Sbjct 123024 ATAATCTCATGGTGCTTTTTCCACCTTA-CTTCTTTAGAGAGGGGCATTTTTTCTGTTTC 122966
Query 160583 TAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAG 160642
| || || | || | || | ||||| | || || || || |||| ||||| |
Sbjct 122965 CAAGCTATTTTCGCCTTTAAGGGCTTTCAACCTCTCTACTATTTCCTGGTTGGTCTTAAT 122906
Query 160643 CGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAG 160702
|||||||| | || || | |||||| | ||| ||||| || || || ||
Sbjct 122905 AGGAAAGTCCATGCCACAGAGGTTTATTAGGTATTTCCACTTTATACTTCTTCTGTAGAG 122846
Query 160703 GTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTC 160762
|| ||||||| ||||| ||||||||||| | |||||| ||||| || || | | ||
Sbjct 122845 ATCTTTCATGCAGTTAATGTCTGCCTGCACCCTGCTCCATGAAGCATATACAATGCTCCT 122786
Query 160763 TAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGC--CAGA 160820
|| | |||| | |||||| ||||| ||||| || || |||||| || || || |
Sbjct 122785 TAACTGGCTGGAAATAAAGACATTATCAAAACATGAAACTATTCCCTTCATGGCAGCAAA 122726
Query 160821 AAGAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAG 160880
|| | || | || |||| ||| || || | ||| || | ||| |||| || |||
Sbjct 122725 AAAAGGAT-TCCGGCGACTTTTTGTCAACATGAATGCAGTAAAAATTCAGAGGAGCATAG 122667
Query 160881 ATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCT 160940
|| | ||| || | || || | |||||| || || |||| | ||| | ||||| ||
Sbjct 122666 ATTGACCTTAGAAGTCTATCAAGCATCTCAATTTTGTGATAAACCACAACTGAGTAAGCA 122607
Query 160941 ATCGGAAACTC 160951
| ||||| ||
Sbjct 122606 ACTGGAAATTC 122596
>seq63
Length=14936771
Score = 154 bits (170), Expect = 2e-32
Identities = 242/346 (70%), Gaps = 3/346 (1%)
Strand=Plus/Plus
Query 160044 CTGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAAT 160103
||||| ||||| || | || || || |||| |||| | |||| || ||||||
Sbjct 4700516 CTGTGGCGCAGGTGCACCTCGAGGCACTGGATGGCGGCCTCGTCCACCAGGGGGTCGAAC 4700575
Query 160104 TTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAAC 160163
|| || || || |||||||| | ||| || |||||| ||| ||| |||| || |
Sbjct 4700576 TTGTTGGCCAAGAGATGGTGC---TGCTGGAGCATCCAGGGCAGGTCCCCGGCGCCATAG 4700632
Query 160164 ACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACG 160223
|||||||||| || |||||| ||| |||| |||||||| | || || || |
Sbjct 4700633 ACGCAGACGGCGCGCTGGTGCACACCGGTGCAGGGCGGGTAGGGTGCGCCCTTGCTGGTG 4700692
Query 160224 TCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCG 160283
|| || || |||||||||||| || | | ||| || || | |||||| ||| |||
Sbjct 4700693 TCGCCCTCCAGGTACTGCCACTTGACCAGGCGGGCCATGGCGTTCATGTCCGAGAGCTCG 4700752
Query 160284 TATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCAC 160343
| |||| | | || || || || || ||||| ||||| || | || ||||||||
Sbjct 4700753 AACTTGTTGTTGTGCGGCACAGCCCCCGGCACGCCAGGCATGCGGTTGAGCGTGGCCCAG 4700812
Query 160344 AGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACT 160389
| ||| || ||||||||||| |||||||| ||||| || | |||||
Sbjct 4700813 ACGTGCTCCTCGGGGCTGTAGGTGTCCTTGGACCACTCGAAGAACT 4700858
Score = 140 bits (154), Expect = 4e-28
Identities = 248/358 (69%), Gaps = 14/358 (4%)
Strand=Plus/Plus
Query 160619 GACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTT 160678
||||||||| ||| ||||||| || |||||||| || || ||| | | |||
Sbjct 4701085 GACGATCTCGGCGTTGGTCTTGATGGGGAAGTCGGTGCCACAGGTGTTGAGGAGGTAGCG 4701144
Query 160679 CCATTTCGCGCTCAGGTC----GTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGC 160734
||| | || |||| | | |||||||| ||| || || | || ||||||| |
Sbjct 4701145 CCA----GGGCACAGGGCTCTGGAGCAGGTCCTGCATACAGTTCAGGTCAGCCTGCAGCC 4701200
Query 160735 GGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAAC 160794
|| |||||| || || || |||||||| || ||||||||||||||||| ||| |
Sbjct 4701201 GGGACCAGGAGGCATAGACCACGTTCTCCAGGCGGCTGGCCACAAAGACGTTGGGGAAGC 4701260
Query 160795 ACGACACGAT---TCCCACCACCGCCAGAAAGAACATCTTATCCGCCTTTCGGTCCACGT 160851
| | |||| || ||| || || | ||| || || ||| ||||| ||||
Sbjct 4701261 AGGCGGCGATGGCTCGCACGGCCTCCTGGAAGGTGG-CTGG--CGACTTGCGGTCGACGT 4701317
Query 160852 GCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTA 160911
| | ||| || |||||||| || ||||||| || || || | || |||||||||||| |
Sbjct 4701318 GGATGCAGTAGAGGTTCTGGGGGGCGTAGACGGACCGCAGGAGCCGCTCGAACATCTCGA 4701377
Query 160912 TCTTATGATGGATCACGATAGAGTAGGCTATCGGAAACTCGGTCTCCTCGCGACTCAG 160969
| || | ||||| || || |||||||| || || || |||| |||||| | |||||
Sbjct 4701378 TTTTGTCGTGGATGACCATGGAGTAGGCGATGGGGAAGTCGGCCTCCTCCTGGCTCAG 4701435
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 574861057541280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |