Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015 -06-23] 326,828 sequences; 1,595,295,449 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq266184 123 5e-23 seq95 93.3 8e-14 seq285 91.5 3e-13 >seq266184 Length=251 Score = 123 bits (136), Expect = 5e-23 Identities = 139/186 (75%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || || ||||| || |||| | || |||||||| |||||||||||||| ||||| Sbjct 3 GATGTTGTAGTCAGACAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCT 62 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||||| |||||||| || ||||| || ||||| || || || ||||| |||| Sbjct 63 TTGTTGGTCAGGTGGGATACCTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATAGT 122 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 || || ||||| ||||| || ||||| || ||||| ||||| || || | || || || Sbjct 123 GTCAGAAGATTCAACTTCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTG 182 Query 192534 CATTTT 192539 ||| || Sbjct 183 CATCTT 188 >seq95 Length=9561987 Score = 93.3 bits (102), Expect = 8e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 49846 CCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTT 49905 |||| || ||| || | ||||||| |||||| | ||| |||||||||||||| || | Sbjct 3110867 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 3110808 Query 49906 TAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCGACACACGCAAATG 49965 | |||||||| ||||||||||| | ||||||||| || || || || ||||| | Sbjct 3110807 TCAGCCAAAAAATTGATGCAAATGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 3110748 Query 49966 CTATTA 49971 |||||| Sbjct 3110747 CTATTA 3110742 >seq285 Length=3013400 Score = 91.5 bits (100), Expect = 3e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| || ||||| | || | || | ||| | ||| || ||| || || ||| Sbjct 2914835 ATGCCACCCCTCAGACGCAGCACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCA 2914776 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || ||| |||| |||| || || ||||||||||| | ||||| ||||| || Sbjct 2914775 GAGAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGA 2914716 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| ||||| || ||||| || | || | || Sbjct 2914715 GGAATGCCTTCCTTGTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCA 2914656 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || || || ||||| || || || || || || | ||| ||||||||||| Sbjct 2914655 ACCTCCAGGGTGATGGTCTTCCCCGTCAAGGTCTTCACAAAGATCTGCATTTT 2914603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 980357505997800