Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015 -06-23] 326,828 sequences; 1,595,295,449 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq198 161 7e-34 seq288 158 9e-33 seq294479 129 4e-24 seq194436 109 4e-18 seq283712 107 1e-17 seq629 102 6e-16 seq264600 100 2e-15 >seq198 Length=34638458 Score = 161 bits (178), Expect = 7e-34 Identities = 932/1470 (63%), Gaps = 38/1470 (3%) Strand=Plus/Plus Query 281432 ACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTC 281491 || || || || || |||||||| | ||||| ||||| ||||| || ||||| || | Sbjct 32770243 ACGTTCAGGATGCCGTTGGCATCTATGTCAAAAGTGACCTCAATCTGGGGGACTCCACGG 32770302 Query 281492 TGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAAT 281551 | || || ||||| ||| | || ||| | ||||| || || || || || | Sbjct 32770303 GGCGCTGGGGGGATGCCTGTTAGATCAAACTTGCCCAGCAAGTTGTTGTCCTTTGTCATA 32770362 Query 281552 TTTCGTTCACCCTCGAAAATTTGGAT-AGTA-ACTACAGTTTGATTATCTGAATAAGTTG 281609 | ||||||||| | | |||| || | ||| | | || || || || || || | Sbjct 32770363 GCCCTCTCACCCTCGTACACCTGGACCAGGACACTGC--TCTGGTTGTCGGAGTAGGTCG 32770420 Query 281610 TAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATA 281668 | || ||||| ||| ||| ||||| || ||||| | | || | | |||||| Sbjct 32770421 TGAAGG-TCTGGGTTTGTTTGGTGGGAATGGTAGTGTTACGCTTGATGAGAGCGGTCATC 32770479 Query 281669 ATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTT 281728 | ||||||||||| || | || || || ||||| |||||||| | || | | || Sbjct 32770480 ACTCCACCAGCTGTCTCAATGCCCAGGGACAGAGGGGTGACATCCAACAGCAACAGATCC 32770539 Query 281729 TGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCA 281788 || | || ||| | | || | || ||||||||||| | |||||| ||||| ||| Sbjct 32770540 TGCACGTTCTCAGACTTGTCTCCCATGAGGATAGCTGCTTGCACAGCAGCGCCATAAGCA 32770599 Query 281789 ACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGA 281848 ||||||||||| ||||| | | | || || | ||| |||||||| || | || Sbjct 32770600 ACAGCTTCATCTGGATTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAAGTCCTGTAGC 32770659 Query 281849 AGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGT 281908 || | | | ||| || ||||||| || || || |||| || ||||| || | ||| Sbjct 32770660 AGCTTTTGGATCTTGGGGATACGAGTGGAGCCACCCACTAGCACTATTTCCTGGATCTGA 32770719 Query 281909 GATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAG-CTCTAAA 281967 || || ||||| | ||| | | || || || || || | || | | | || Sbjct 32770720 CCCTTGTCTAGTTTGGCATCACGCAGGGCCTTCTCCACTGGCTCCA-ACGTGCCACGGAA 32770778 Query 281968 CAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAA--GA-GTGACATTATAA-TCAA 282023 | || | | || || ||||| || | ||||| || ||| || || |||| Sbjct 32770779 GAGATCAGCATTGAGCTCCTCGAAGCGGGCACGAGTAATGGAGGTG----TAGAAGTCAA 32770834 Query 282024 TTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGA--AGATAGTGCACG 282081 | || ||| | | || || | ||||| ||| ||| || ||||| || |||| || Sbjct 32770835 TGCCCTCGTAGAGCGAGTCGATCTCAATGCTAGCTTGGGTGGAAGAGCTGAGAGTG--CG 32770892 Query 282082 TTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCAAA 282139 ||||| | ||||| ||||| | || | | | || | ||| |||| | | Sbjct 32770893 CTTAGCTCTCTCACAAGCTGTACGCAGCCGCCTCACTGC--TCGCTTATTGCCAGCAATG 32770950 Query 282140 TCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACGATTATCAA 282197 || ||| | || | |||||| ||||| ||| | ||| | || | || || |||| Sbjct 32770951 TCACGTTTGTGCTTACGCTTGAACTCTTCTACAAA--ATGGTTCACCATGCGGTTGTCAA 32771008 Query 282198 AATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTT 282257 | || || || |||| | |||| || | || | | |||| || | ||||| | Sbjct 32771009 AGTCCTCCCCACCCAGATGGGTATCACCGGCTGTGGACTTCACTTCAAAGATGCCATCCT 32771068 Query 282258 CAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCA 282317 ||| | | | | ||||| || || || |||| ||||| || || |||||| Sbjct 32771069 CAATGGTGAGGATGGACACATCGAAAGTGCCCCCTCCCAAGTCAAAGATGAGCACATTCT 32771128 Query 282318 TTTCTTTGTCTTGG------TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTT 282371 ||||| | || || || || | |||||||| | |||||| || || || | Sbjct 32771129 TTTCTCCAGCCCGGGTACCTTTCTTGTCCAAGCCATACGCTATAGCAGCTGCTGTGGGCT 32771188 Query 282372 CATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTC 282431 |||| || || | || |||||||| |||| || | || |||||||| ||||| || | Sbjct 32771189 CATTGATGATGCGCATCACATTAAGGCCAGTGATGGTACCAGCATCTTTGGTGGCCTGGC 32771248 Query 282432 TTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCA-TCTGTTACTTCTTTTCCA 282490 || || ||||| || || ||||| || || ||||| ||| |||| || | || Sbjct 32771249 GCTGGGAGTCGTTGAAGTAAGCAGGCACTGTGATAACAGCATTCTG-CACCTTGCGGCCC 32771307 Query 282491 ATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGA 282550 | |||||| || | | |||||||| | | | ||| || || | ||||| Sbjct 32771308 AGATAAGCCTCAGCAATCTCCTTCATTTTGGTAAGTACCATGGAGCTGATCTCCTCTGG- 32771366 Query 282551 GAATATTG-CTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATT 282609 ||| | | ||| ||| | || |||| | | ||| || || |||| Sbjct 32771367 GAAGAAGGTCTTCATCTCACCCTTGTACTCCACTTGCACCTTTGGCTTGCCACTTTCATT 32771426 Query 282610 AATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCT 282669 | || || ||||| | ||||| ||||| || || | |||||| | | | | Sbjct 32771427 CACCACACGGAAGGGCCAGTGCTTCATGTCTGACTGCACTGTGGGGTCATCATACTTGCG 32771486 Query 282670 ACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTT 282729 || || | || || ||||| || || || ||||| || || | || | || | || Sbjct 32771487 GCCGATGAGACGCTTGGCATCGAAGATGGTGTTGGTGGGGTTCATAGCCACCTGGTTCTT 32771546 Query 282730 GGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCG 282789 ||| ||||| || || ||| | || || || || || | ||||| || || ||||| Sbjct 32771547 GGCAGCATCACCGATGAGACGCTCGGTATCAGTGAAGGCCACATAGCTGGGTGTGGTGCG 32771606 Query 282790 ATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACT 282849 || || || ||||| ||||| || || ||||| |||| || | ||||| || || Sbjct 32771607 GTTGCCCTGGTCATTGGCAATGATCTCCACTTTGCCATGCTGGAAGACACCCACGCAGGA 32771666 Query 282850 AAAAGTTGTTCCTAAATCAATACCAATAGC 282879 | | || || || || || || || || || Sbjct 32771667 ATATGTAGTGCCCAAGTCGATGCCGATTGC 32771696 >seq288 Length=1751179 Score = 158 bits (174), Expect = 9e-33 Identities = 371/551 (67%), Gaps = 12/551 (2%) Strand=Plus/Plus Query 281777 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 281836 ||||| || || ||||||||||||||||| | | | || | | ||| |||||||| Sbjct 747018 GCACCGTAAGCCACAGCTTCATCAGGATTGATGCTCTTGTTCAACTCTTTGCCATTGAAG 747077 Query 281837 AAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAAT 281895 |||| ||||||| ||| | ||| || ||||||| || || ||||| || || || Sbjct 747078 AAATCCTGTAGAAGTT-TCTGAATCTTTGGGATACGAGTAGACCCACCAACCAACACGAT 747136 Query 281896 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 281955 ||||| | ||||||||| || | ||| | |||| | | ||||||| || || || || Sbjct 747137 GTCATGGATCTGTGATTTGTCTAATTTAGCATCCCGCAGAGCTTTTTCCACAGGATCCAG 747196 Query 281956 ACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAA--GA-GTGAC 282012 | | |||| ||| | | || ||||| || |||||| |||| || ||| Sbjct 747197 GGTGCCACGGAACAGGTCAGCATTCAGCTCTTCAAAGCGAGCTCTGGTAATCGATGTG-- 747254 Query 282013 ATTATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAG 282071 || || ||||| || || | | |||||||| |||||| | | ||||| |||| Sbjct 747255 --TAGAAGTCAATACCCTCATAGAGAGAATCAATTTCAATACTGGCCTGAGTGCTCGAAG 747312 Query 282072 ATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGAT- 282130 | || | ||| || |||||||||||||| || | || | || | || | | || | Sbjct 747313 AGAGGGTACGCTTTGCACGTTCACATGCAGTGCGGAGGCGACGAACTGC-TCTCTTGTTC 747371 Query 282131 TGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGA 282190 | | | | |||| | || | ||| | |||||| || ||| | | || | || Sbjct 747372 TCACTAATATCTTTCTTGTGTTTGCGCTTGAATTCAGCAATGAAGTGGTTGACCATGCGG 747431 Query 282191 TTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGT 282250 |||||||||||||| || ||||| | ||||| |||| || | | | || | || | Sbjct 747432 TTATCAAAATCTTCTCCACCCAAGTGAGTATCACCTGCAGTGGATTTCACCTCAAAGATG 747491 Query 282251 CCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGT 282310 |||||||| | || || || | |||||| ||| ||||| || | ||||| ||||| Sbjct 747492 CCATCTTCTATAGTCAGAATTGACACATCAAAGGTACCACCTCCAAGGTCAAAGATAAGA 747551 Query 282311 ACATTCATTTC 282321 || ||| |||| Sbjct 747552 ACGTTCCTTTC 747562 Score = 118 bits (130), Expect = 8e-21 Identities = 140/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||| | || ||||||||||| | |||| |||| | || || ||||| ||||||| Sbjct 748677 CAAAGACTGTGTTGGTTGGATTCATTGCAACTTGGTTCTTTGCAGCATCACCAATCAACC 748736 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 |||||| ||||| || | ||| || ||| || || || ||||| |||||||| |||| Sbjct 748737 TTTCTGTGTCTGTGAAGGCAACGTAGCTTGGCGTGGTCCGGTTACCCTGATCATTGGCAA 748796 Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869 | ||||| || || |||| ||| ||||||| |||||| | | || || || | ||||| Sbjct 748797 TGATTTCCACCTTCCCATGTTGGAATACACCAACACAAGAATAGGTGGTGCCAAGATCAA 748856 Query 282870 TACCAATAGC 282879 | || | ||| Sbjct 748857 TTCCGACAGC 748866 Score = 107 bits (118), Expect = 1e-17 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || || |||||||| |||| ||||||||||||||| ||||| ||||||| | ||| Sbjct 747684 TTCTTGTCCAGACCATAGGCAATAGCAGCAGCAGTTGGCTCATTGATAATTCGGAGTACA 747743 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || || ||||| |||| ||||| || || || || | || || || || ||||| Sbjct 747744 TTGAGCCCTGCAATGGTTCCAGCATCCTTTGTAGCCTGGCGCTGGGAGTCATTGAAATAG 747803 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTAC 282480 || || ||||| | ||| |||| ||| || Sbjct 747804 GCTGGTACAGTGACAACAGCATTTGTAAC 747832 >seq294479 Length=371 Score = 129 bits (142), Expect = 4e-24 Identities = 192/272 (71%), Gaps = 3/272 (1%) Strand=Plus/Plus Query 282191 TTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGT 282250 || |||||||||||||| ||||| | || | || | || || | |||| || | Sbjct 33 TTGTCAAAATCTTCACCACCCAAATGGGTGTCACCAGCGGTGGCCTTAACTTCAAAGATA 92 Query 282251 CCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGT 282310 || ||||||| ||||| | || ||||| || |||||||||| || ||||| | Sbjct 93 CCGTCTTCAATGGACAACAAAGAGACATCGAAAGTACCACCACCCAAGTCGAAAATCAAG 152 Query 282311 ACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGT 282370 || | ||| || | | | || || | ||| || |||| ||||| || || ||| Sbjct 153 ACGTGTTCTTCCTTACCCT---TCTTGTCCAAACCGTAAGCAATGGCAGCGGCGGTAGGT 209 Query 282371 TCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGT 282430 || |||||||| | ||| ||||| | ||||||||| | || ||||| || || |||||| Sbjct 210 TCGTTAATAATACGCAAGACATTCAAACCAGCAATGGTACCAGCATCCTTGGTAGCTTGT 269 Query 282431 CTTTGTGAATCGTTAAAATATGCAGGAACAGT 282462 ||||| |||||||| || || || || ||||| Sbjct 270 CTTTGAGAATCGTTGAAGTAAGCTGGGACAGT 301 >seq194436 Length=156 Score = 109 bits (120), Expect = 4e-18 Identities = 93/115 (81%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 282359 GCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCT 282418 || || ||||||||||||| |||||||||||| || | |||||| || | || ||||| Sbjct 154 GCTGCGGTTGGTTCATTAACAATTCTCAAAACGTTCAAACCAGCGATGGTACCAGCATCC 95 Query 282419 TTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 || |||||||||||||| | || || ||||| ||||||||||||| || |||| Sbjct 94 TTGGTGGCTTGTCTTTGCGCGTCATTGAAATAAGCAGGAACAGTAACGACAGCAT 40 >seq283712 Length=310 Score = 107 bits (118), Expect = 1e-17 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 282334 TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATT 282393 ||| || | ||| || || || ||||| || ||||||||||| | | | ||||| || Sbjct 118 TTTTTCCAAACCGTAAGCTAAGGCAGCGGCGGTTGGTTCATTGACGACACGTAAAACGTT 177 Query 282394 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 282453 | |||| ||||| ||||| |||||||| ||||||||||| | ||| || || || || Sbjct 178 CAAACCAACAATTTGGCCTGCGTCTTTAGTAGCTTGTCTTTGGGCATCATTGAAGTAAGC 237 Query 282454 AGGAACAGTAATAACGGCATCTGTTACTTCTTTTC-CAATATAAGCGCTTGCTGTTTGTT 282512 |||||| || | ||| |||| | | || || ||| | | ||||| ||||||| | Sbjct 238 AGGAACGGTGACAACAGCATTTTTGAC-GCTCTTCGCTAAGTAAGCCTCCGCTGTTTCCT 296 Query 282513 TCATTTTACTTAA 282525 |||||||| |||| Sbjct 297 TCATTTTATTTAA 309 >seq629 Length=1324259 Score = 102 bits (112), Expect = 6e-16 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 131176 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 131235 ||| ||||| ||| | |||||||| ||||| || |||||| | ||| | | ||||| Sbjct 163605 TGTTGTAGCTACAGTGGCATTTGGAATGGGCATCAATAAAGCAGATATCCGGAAGGTTAT 163546 Query 131236 TCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 131295 |||||| || || || ||| | || ||| ||||||||||||||||| ||||| ||||| Sbjct 163545 TCATTATGGTGCCCCTAAGGAAATGGAATCCTATTATCAAGAAATTGGGAGAGCTGGTCG 163486 Query 131296 TGATGG 131301 |||||| Sbjct 163485 TGATGG 163480 >seq264600 Length=247 Score = 100 bits (110), Expect = 2e-15 Identities = 172/245 (70%), Gaps = 6/245 (2%) Strand=Plus/Minus Query 281594 TTATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCA 281653 || || | |||||| | || ||| |||||| ||| ||||| || | |||||| | Sbjct 246 TTGTCAGCATAAGTAGAGAAAACTTCGGATTTCTTAGTTGGAATGGTAGAGTTTCTTGGA 187 Query 281654 ATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCA 281713 || | |||||||| | ||||||||| ||||| | ||| | || | |||| |||||| Sbjct 186 ATCAACTTGGTCATGACACCACCAGCAGTTTCAATACCCAAGGATAATGGAGCGACATCC 127 Query 281714 ACTAGGACAATA--TTTTGAAGTTTTTCATCAGTT-TGACCAACAAGAATAGCTGCTTGA 281770 | | |||||| | |||| || || | | | | |||| | |||||| |||||| Sbjct 126 AACA--ACAATAGATCTTGA-GTCTTGGAAGATTCGTCACCAGTCAAAATAGCAGCTTGA 70 Query 281771 ATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCA 281830 | ||||||||| || |||||||||||||| || || | || | ||| ||| |||| Sbjct 69 ACAGCAGCACCGTAAGCAACAGCTTCATCTGGGTTGATAGATCTGTTTGGTTCCTTACAG 10 Query 281831 TTGAA 281835 ||||| Sbjct 9 TTGAA 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3724584526375128