Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015 -06-23] 326,828 sequences; 1,595,295,449 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq285 174 3e-38 seq266184 145 1e-29 seq511 140 6e-28 seq371 118 2e-21 >seq285 Length=3013400 Score = 174 bits (192), Expect = 3e-38 Identities = 177/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || |||| |||||| || | ||||||||| || || ||||| || || || ||||| Sbjct 2914832 CCACCCCTCAGACGCAGCACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAG 2914773 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || || || ||||||||||| || || || ||||||||||| Sbjct 2914772 AGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGAGGA 2914713 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| ||||| || || || || ||||| ||||| || ||| | || || || Sbjct 2914712 ATGCCTTCCTTGTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACC 2914653 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 |||| || || ||||| || ||||| ||||| ||||| ||||||||| || Sbjct 2914652 TCCAGGGTGATGGTCTTCCCCGTCAAGGTCTTCACAAAGATCTGCATTTTT 2914602 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || |||| |||||| || | ||||||||| || || ||||| || || || ||||| Sbjct 2917777 CCACCCCTCAGACGCAGCACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAG 2917718 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || || || ||||||||||| || || || ||||||||||| Sbjct 2917717 AGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGAGGA 2917658 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| ||||| || || || || ||||| ||||| || ||| | || || || Sbjct 2917657 ATGCCTTCCTTGTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACC 2917598 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || ||||| ||||||| ||||| ||||| |||||||| Sbjct 2917597 TCCAGGGTGATGGTCTTCCCTGTCAGGGTCTTCACAAAGATCTGCAT 2917551 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || |||| |||||| || | ||||| || ||||| ||||| || || || || || Sbjct 2918005 CCACCCCTCAGACGCAGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 2917946 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | || ||||| || || || ||||||||||| || || || |||||||| || Sbjct 2917945 AAGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGA 2917886 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| || ||||| ||||| || || ||||| ||||| || ||| | || || || Sbjct 2917885 ATGCCTTCTTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACC 2917826 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || ||||| ||||||| ||||| ||||| |||||||| Sbjct 2917825 TCCAGGGTGATGGTCTTCCCTGTCAGGGTCTTCACAAAGATCTGCAT 2917779 >seq266184 Length=251 Score = 145 bits (160), Expect = 1e-29 Identities = 143/185 (77%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 82626 TGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGT 82685 || || || || ||||| | ||||||||||||| | ||| || ||||||||||| | | Sbjct 1 TGGATGTTGTAGTCAGACAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAAT 60 Query 82686 CTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATC 82745 |||||||| || || || || |||||||| ||||||||||||| || ||||| ||||| Sbjct 61 CTTTGTTGGTCAGGTGGGATACCTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATA 120 Query 82746 GTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATC 82805 || ||| || ||| ||||||| || || ||||| || || || ||||| || || || Sbjct 121 GTGTCAGAAGATTCAACTTCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATT 180 Query 82806 TGCAT 82810 ||||| Sbjct 181 TGCAT 185 >seq511 Length=1428375 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || |||| |||||| || | |||||| || || || ||||| || || || ||||| Sbjct 1121408 CCACCCCTCAGACGCAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 1121349 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || || || ||||||||||| || | || ||||| || || Sbjct 1121348 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGGGGG 1121289 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || || ||||| || || ||||| ||||| || || | || || || Sbjct 1121288 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCGACC 1121229 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || |||||||| |||| ||||| ||||| |||||||| Sbjct 1121228 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1121182 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || |||| |||||| || | |||||| || || || ||||| || || || || || Sbjct 1121636 CCACCCCTCAGACGCAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 1121577 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || || || ||||||||||| || | || ||||| || || Sbjct 1121576 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGGGGG 1121517 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || || ||||| || || ||||| ||||| || || | || || || Sbjct 1121516 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCAACC 1121457 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || |||||||| ||||| ||||| ||||| |||||||| Sbjct 1121456 TCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 1121410 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || |||| |||||| || | |||||| || || || ||||| || || || || || Sbjct 1121864 CCACCCCTCAGACGCAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 1121805 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || || || ||||||||||| || | || ||||| || || Sbjct 1121804 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGGGGG 1121745 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || || ||||| || || ||||| ||||| || || | || || || Sbjct 1121744 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCAACC 1121685 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || |||||||| ||||| ||||| ||||| |||||||| Sbjct 1121684 TCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 1121638 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || |||| |||||| || | |||||| || || || ||||| || || || || || Sbjct 1122092 CCACCCCTCAGACGCAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 1122033 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || || || ||||||||||| || | || ||||| || || Sbjct 1122032 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGGGGG 1121973 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || || ||||| || || ||||| ||||| || || | || || || Sbjct 1121972 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCAACC 1121913 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || |||||||| ||||| ||||| ||||| |||||||| Sbjct 1121912 TCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 1121866 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || |||| |||||| || | |||||| || || || ||||| || || || || || Sbjct 1122320 CCACCCCTCAGACGCAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 1122261 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || || || ||||||||||| || | || ||||| || || Sbjct 1122260 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGGGGG 1122201 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || || ||||| || || ||||| ||||| || || | || || || Sbjct 1122200 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCAACC 1122141 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || |||||||| ||||| ||||| ||||| |||||||| Sbjct 1122140 TCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 1122094 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || |||| |||||| || | |||||| || || || ||||| || || || || || Sbjct 1122548 CCACCCCTCAGACGCAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 1122489 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || || || ||||||||||| || | || ||||| || || Sbjct 1122488 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGGGGG 1122429 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || || ||||| || || ||||| ||||| || || | || || || Sbjct 1122428 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCAACC 1122369 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || |||||||| ||||| ||||| ||||| |||||||| Sbjct 1122368 TCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 1122322 >seq371 Length=20460901 Score = 118 bits (130), Expect = 2e-21 Identities = 124/163 (76%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 60149 GCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATA 60208 || ||||||||||| ||| | || ||||| || |||||||| ||||| || |||||||| Sbjct 849274 GCTTTATGGTGGTATTATGTCTCCAAAGGAATTGAATACTTGGATACAGTATTTTTCATC 849215 Query 60209 CTTAGGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTT 60268 || ||||| || ||||| || ||||||| | || || ||||| ||||| || ||||| Sbjct 849214 CTGAGGAAGAAATTTAACCAAATTAGTTTCCTTCATGTCTATCACCATTTCACCATGTTC 849155 Query 60269 ACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCAAG 60311 || | | ||| | || ||||| ||| |||| || || |||| Sbjct 849154 ACCCTCTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACAAG 849112 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 60443 CAATTCCATATAGCTATAGGACATACCGCTATGTCCATTTACATAGATTGTCCGTTTCCA 60502 || |||||| | |||| || || || || |||| ||||| || |||||||| || || Sbjct 846303 CAGTTCCATGTGACTATTGGCCACACAGCCTTGTCTATTTATATTGATTGTCCTTTCCCC 846244 Query 60503 AAATGGACACAATGGTCAGTTATCATTTATTCTATTACTTTTATATTACTGTTTGGTAAC 60562 ||||||| || ||| || || | ||| || | || || || || |||||||||||| Sbjct 846243 AAATGGATGCACTGGGGTGTAATTTTCTATGCTGTCACCTTCATTTTCCTGTTTGGTAAC 846184 Query 60563 TTCTATTTTAGAACATACAAG 60583 ||||| | | | ||||||||| Sbjct 846183 TTCTACTATCGGACATACAAG 846163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 977715814554692