Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015
-06-23] 326,828 sequences; 1,595,295,449 total letters
Query= NC_024696.1
Length=180800
Score E
Sequences producing significant alignments: (Bits) Value
seq3428 136 5e-27
seq9585 120 3e-22
seq63 114 1e-20
seq371 105 8e-18
>seq3428
Length=205224
Score = 136 bits (150), Expect = 5e-27
Identities = 561/878 (64%), Gaps = 9/878 (1%)
Strand=Plus/Plus
Query 162120 ATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGA 162179
||||||||| || || || | ||| || ||| ||| ||||| || | || || |
Sbjct 31688 ATCGAACTTATTAGCAAAGAAGTGGTG---GTTTCGCAACATCCAGTTCAAGTCTCCTGC 31744
Query 162180 TCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATC 162239
||| || ||||| || || || ||||| | || ||||| || || || | || || |
Sbjct 31745 TCCAAAAACGCAGACAGAGCGAACGTGAATCCCACTGCATGGTGGGTAGGGCGCACCTTT 31804
Query 162240 GTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGA 162299
||| || || || |||| |||||||| || ||||| | | || | |||||| ||
Sbjct 31805 AGACACGTCGCCTTCAAAGTACTGCCACTTCACAAACCTGGCCAGCGCATTCATGTCAGA 31864
Query 162300 GGTGTCGTACTTGTACACTG-ACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358
|| |||| | |||| | | || || || || || | || | |||||| | |
Sbjct 31865 AACATCAAACTTATT-ACTGGAAGAAACTGCACCTGGGACTTCAGGGATTCTCTGAATTG 31923
Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418
| |||||||||| || || || || || || || || | |||||| || || ||
Sbjct 31924 TTGCCCACAGGTACTCATCAGGGCTGTAAGTGTCTTTTGCCCACTCAATAAATGAAAGGA 31983
Query 162419 CCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTAC 162478
| | | | ||| |||| || | ||| | | | ||| || || ||||
Sbjct 31984 TTTTGCTGTTTTCTAGTATGTGTCCTACAAATCTTCTGCTAATGACAAAATAGGCACTAC 32043
Query 162479 CAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCA 162538
||||||| | || | | | ||| || | | ||||||| || ||||| |||
Sbjct 32044 CAGAAAAAATTGGAGTACTGAGAGGTGGTCGTTGTTTGTCTATGCCTGTGTTCTTTACTT 32103
Query 162539 TTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGTT 162598
| || || | | | | || ||| ||||||| | ||| | || | | ||
Sbjct 32104 TACCATCAATAATCTCATGGTGCTTTTTCCACCTTACTTCTTTAGAGAGAGGCATTTTTT 32163
Query 162599 CGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGG 162658
| || || | || || ||| | ||| |||||| || || || | ||||
Sbjct 32164 CCGTTTCCAAGCTATTTTCACCTTTAAGGGCTTTCAGCCTCTCTACTATTTCCTGGTTGG 32223
Query 162659 TCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTC 162718
|||||| |||||||| |||| || || || || | ||||||||||| || ||
Sbjct 32224 TCTTAATAGGAAAGTCCATGCCACAAAGGTTTATTAAGTATTTCCACTTCGTACTTCTTC 32283
Query 162719 CGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGA 162778
||| || || | | ||||| | || ||||| || | ||||| || || || || |
Sbjct 32284 TGTAGAGGTCTTTCATGCAGTTAATGTCTGCCTGCACCCTGCTCCATGAAGCATATACAA 32343
Query 162779 CGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGG 162838
| ||||| ||| ||| | ||||||||| || ||||| |||||||| ||| |||| |
Sbjct 32344 CACTCTCTAACTGGCTGGAAATAAAGACATTATCAAAACATGAAACTATTCCCTTCACAG 32403
Query 162839 CCAGTGAGAA--CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGG 162896
||| | || || | |||| | || || || | |||||| | |||||||||
Sbjct 32404 -CAGCAAAAAAGGATTCTGGAGACTTT-TTGTCAACATGAATGCAGTAAAAATTCTGAGG 32461
Query 162897 GGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGA 162956
|| ||||| | || || | ||| || | |||||| || || || | ||||| || ||
Sbjct 32462 AGCATAGATTGATCTTAGAAGTCTATCAAGCATCTCAATTTTGTGATAAACCACTATGGA 32521
Query 162957 ATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAG 162994
|| || || || || ||||| || || |||||||
Sbjct 32522 GTAAGCAATTGGAAATTCAGCTTCTTCATTGCTGAGAG 32559
>seq9585
Length=150949
Score = 120 bits (132), Expect = 3e-22
Identities = 566/888 (64%), Gaps = 36/888 (4%)
Strand=Plus/Minus
Query 162120 ATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGA 162179
||||||||| || || || | ||| || ||| || ||||| || | || ||
Sbjct 123440 ATCGAACTTATTAGCAAAGAAGTGGTG---GTTTCGCAGCATCCAGTTCAAGTCTCCTAC 123384
Query 162180 TCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATC 162239
||| ||||| || || || || ||||| | || ||||| || || || | || || |
Sbjct 123383 TCCAAACACACAGACAGAGCGAACGTGAATCCCACTGCATGGTGGGTAGGGCGCACCTTT 123324
Query 162240 GTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGA 162299
|||||| || || |||| |||||||| || ||||| || | || | |||||| ||
Sbjct 123323 AGACACATCACCTTCAAAGTACTGCCACTTCACAAACCTGGTCAGCGCATTCATGTCAGA 123264
Query 162300 GGTGTCGTACTTGTACACTG-ACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358
|| ||||| | |||| | | || || || | || | || | |||||| | |
Sbjct 123263 AACATCATACTTATT-ACTGGAAGAAACTGCACCCAGGACTTCAGGGATTCTCTGAATTG 123205
Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418
| |||||||||| || || || || || || || || | |||||| || || |||
Sbjct 123204 TTGCCCACAGGTACTCATCAGGGCTCTAAGTGTCTTTTGCCCACTCAATAAA-----TGA 123150
Query 162419 CCGTTTTATCGTATAGAATGTAAGAGACGTAGGACC----TGGTCACAATAAAGTACGCG 162474
| || | ||| | ||| | || || || | || | ||| || ||
Sbjct 123149 AAGGATTTTGCTATTT--TCTAATATGTGTTCTACAAATTTGCTAACGACAAAATAGGCA 123092
Query 162475 CTACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACT 162534
||||||||||| | || | | | ||| || | | ||||||| || ||||| |
Sbjct 123091 CTACCAGAAAAAATTGGAGTACTGAGAGGTGGTCGTTGTTTGTCTATGCCTGTGTTCTTT 123032
Query 162535 ACCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGG 162594
||||| | | | | | || ||| ||||||| | |||| | | ||| |||
Sbjct 123031 ACCAT-----CAATAATCTCATGGTGCTTTTTCCACCTTACT-TCTT--TAG-AGAGGGG 122981
Query 162595 ----TGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTC 162650
| ||| || || | || || || | ||| |||| | || || ||
Sbjct 122980 CATTTTTTCTGTTTCCAAGCTATTTTCGCCTTTAAGGGCTTTCAACCTCTCTACTATTTC 122921
Query 162651 TAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAAC 162710
| |||||||||| |||||||| |||| ||||| || || | ||||||||||| |
Sbjct 122920 CTGGTTGGTCTTAATAGGAAAGTCCATGCCACAGAGGTTTATTAGGTATTTCCACTTTAT 122861
Query 162711 GCTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGC 162770
|| || ||| ||||| | | ||||| | || ||||| || | ||||| || ||
Sbjct 122860 ACTTCTTCTGTAGAGATCTTTCATGCAGTTAATGTCTGCCTGCACCCTGCTCCATGAAGC 122801
Query 162771 GTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCC 162830
|| || | |||| ||| ||| | ||||||||| || ||||| |||||||| ||
Sbjct 122800 ATATACAATGCTCCTTAACTGGCTGGAAATAAAGACATTATCAAAACATGAAACTATTCC 122741
Query 162831 CATCACGGCCAGTGAGAACA----TCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATA 162886
| ||| || ||| | || | || || || || | || || || | |||||| |
Sbjct 122740 CTTCATGG-CAGCAAAAAAAGGATTCCGG--CGACTTTTTGTCAACATGAATGCAGTAAA 122684
Query 162887 GATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTA 162946
|||| |||| || ||||| | ||| || | ||| || | |||||| || || || | |
Sbjct 122683 AATTCAGAGGAGCATAGATTGACCTTAGAAGTCTATCAAGCATCTCAATTTTGTGATAAA 122624
Query 162947 CCACGATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAG 162994
|||| | || || || | || || || || || || |||||||
Sbjct 122623 CCACAACTGAGTAAGCAACTGGAAATTCTGCTTCTTCATTGCTGAGAG 122576
>seq63
Length=14936771
Score = 114 bits (126), Expect = 1e-20
Identities = 259/387 (67%), Gaps = 2/387 (1%)
Strand=Plus/Plus
Query 162598 TCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTG 162657
|||| ||| | ||||| | ||| || |||||||| | || || ||||| |||
Sbjct 4701041 TCGGACTCGATGCTGTTCTGCCCCTGCAGCGCCTTCAGATTGCGGACGATCTCGGCGTTG 4701100
Query 162658 GTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGT 162717
||||| | ||| ||||||||||| ||| || | | || ||| || | |
Sbjct 4701101 GTCTTGATGGGGAAGTCGGTGCCACAGGTGTTGAGGAGGTAGCGCCAGGGCACAGGGC-T 4701159
Query 162718 CCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACAC 162776
| | | ||| ||||| | ||||||||| || ||||| | || ||| || || || ||
Sbjct 4701160 CTGGAGCAGGTCCTGCATACAGTTCAGGTCAGCCTGCAGCCGGGACCAGGAGGCATAGAC 4701219
Query 162777 GACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCAC 162836
||| |||||| | |||| |||||||| ||| ||| || | | || | |||
Sbjct 4701220 CACGTTCTCCAGGCGGCTGGCCACAAAGACGTTGGGGAAGCAGGCGGCGATGGCTCGCAC 4701279
Query 162837 GGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGG 162896
|||| ||| | | || || | || ||||| | |||||| || ||||| ||
Sbjct 4701280 GGCCTCCTGGAAGGTGGCTGGCGACTTGCGGTCGACGTGGATGCAGTAGAGGTTCTGGGG 4701339
Query 162897 GGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGA 162956
|||||||| || || ||| | | |||||||||||| || || | ||| | || || ||
Sbjct 4701340 GGCGTAGACGGACCGCAGGAGCCGCTCGAACATCTCGATTTTGTCGTGGATGACCATGGA 4701399
Query 162957 ATACGCTATGGGGAACTCAGCCTCCTC 162983
|| || |||||||| || ||||||||
Sbjct 4701400 GTAGGCGATGGGGAAGTCGGCCTCCTC 4701426
>seq371
Length=20460901
Score = 105 bits (116), Expect = 8e-18
Identities = 452/703 (64%), Gaps = 15/703 (2%)
Strand=Plus/Minus
Query 176946 GCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAA 177005
|||| ||| | ||||| | | || | ||| || ||||||| |||| | || | ||||
Sbjct 9084791 GCCAACTCTCTTGGGGAGAGGAAATCTTCCACATGTATGAAAGAGTCTGCTGGAATGTAA 9084732
Query 177006 TTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGAT 177065
||||| || || ||||| || | || ||||| | ||||| | || |||| ||| |
Sbjct 9084731 TTTTCATAGTTTTCTCTGGAAGGGCCCAGTACAACTGGTACTGATCCAGCCAGAAGGGCA 9084672
Query 177066 CGGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAAT 177125
||| ||||| || ||||| || || | || || || || ||||| | || ||||||
Sbjct 9084671 TTGTAAAGTTTCTCAGTAATGTAATCTTTATGAACTGAATTTTCAAATGAAAGGTAGAAT 9084612
Query 177126 TTACA--GGAAGATAGTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGT 177183
||||| | |||| || || || |||| | ||| | ||| ||||| | | |
Sbjct 9084611 TTACAAGTGGAGATGGT--TGGAATCAAGTTTTTATCATTGACATAGTCTCCAAAGGCTT 9084554
Query 177184 TCCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACG 177242
|| || ||| || || || | ||| || ||||| ||| || || || || |
Sbjct 9084553 GTCCATAGGTATGGATTTCAATATATTTGCTAAGCTCATTGTAATA-CTTGACTCGAGCA 9084495
Query 177243 TGGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGG 177301
|| || |||||| || || || ||||| || || || || ||||| | || ||
Sbjct 9084494 TGCTCAGGGTTCCAGTTACTTACAACCCAACACACCAAGTT-TTCTTTACTTGGCAC--- 9084439
Query 177302 ATTCGATACTAATGCAGTGTCT-CTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCG 177360
||| | ||| | | | | | | | | | | ||||| ||||| |||||||| |
Sbjct 9084438 -TTCAAATGTAAAGGAACTTGTACCAACCATCATGAAGCCATAAGGCACCTGAATATCTG 9084380
Query 177361 AGTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATACC-TTGTTTGAAGGGG 177419
| || || | || || | || || || || || | ||| || || | ||| || |
Sbjct 9084379 AATCACGCCGATAAGTCAGGGTCAGGTTAAAGAGATGTTCAATGCCACTCTTTTGTGGAG 9084320
Query 177420 CTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTCC 177479
| | | | || || || || |||||||| ||||| || || || | ||| |||| || |
Sbjct 9084319 -TATGAGTTGGAGACTCCAAATTCATCCAAATCCATTTCTGGAATGGTGGCCTGGCTTGC 9084261
Query 177480 GTAGGTAGAGTATAAGGATCTATACTTATCTCTCTGTGGTGAAAGACTACGGCATTGGCT 177539
||||| | || |||| || || || ||||| |||| || ||||||| || |
Sbjct 9084260 TGAGGTAAATTAGTTAGATCCCAGCTGATGTCCCTGTGATGAATGAGAACGGCATGGGAT 9084201
Query 177540 TTGTAATAAACAGATCTGTCTACGGTAACGTGACACGCACGTATGTTAAATCTGGAGCTA 177599
||| || | || | ||| | || | || ||| || | ||||| || | |
Sbjct 9084200 CTGTTGTATAGTGAACGGTCAATAGTCAGATGGCACCCATGGATGTTGAACATCGCTTGG 9084141
Query 177600 CACGCATTTAGATCAAATGGGTGGCCGTAGGGCCACGTCCAGA 177642
|| | |||||||||||| || || | ||||| |||||
Sbjct 9084140 CAGGATGTTAGATCAAATGTCTGACCAAATGGCCAAACCCAGA 9084098
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 576068902828800
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