Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015 -06-23] 326,828 sequences; 1,595,295,449 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq3428 136 5e-27 seq9585 120 3e-22 seq63 114 1e-20 seq371 105 8e-18 >seq3428 Length=205224 Score = 136 bits (150), Expect = 5e-27 Identities = 561/878 (64%), Gaps = 9/878 (1%) Strand=Plus/Plus Query 162120 ATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGA 162179 ||||||||| || || || | ||| || ||| ||| ||||| || | || || | Sbjct 31688 ATCGAACTTATTAGCAAAGAAGTGGTG---GTTTCGCAACATCCAGTTCAAGTCTCCTGC 31744 Query 162180 TCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATC 162239 ||| || ||||| || || || ||||| | || ||||| || || || | || || | Sbjct 31745 TCCAAAAACGCAGACAGAGCGAACGTGAATCCCACTGCATGGTGGGTAGGGCGCACCTTT 31804 Query 162240 GTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGA 162299 ||| || || || |||| |||||||| || ||||| | | || | |||||| || Sbjct 31805 AGACACGTCGCCTTCAAAGTACTGCCACTTCACAAACCTGGCCAGCGCATTCATGTCAGA 31864 Query 162300 GGTGTCGTACTTGTACACTG-ACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 || |||| | |||| | | || || || || || | || | |||||| | | Sbjct 31865 AACATCAAACTTATT-ACTGGAAGAAACTGCACCTGGGACTTCAGGGATTCTCTGAATTG 31923 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418 | |||||||||| || || || || || || || || | |||||| || || || Sbjct 31924 TTGCCCACAGGTACTCATCAGGGCTGTAAGTGTCTTTTGCCCACTCAATAAATGAAAGGA 31983 Query 162419 CCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTAC 162478 | | | | ||| |||| || | ||| | | | ||| || || |||| Sbjct 31984 TTTTGCTGTTTTCTAGTATGTGTCCTACAAATCTTCTGCTAATGACAAAATAGGCACTAC 32043 Query 162479 CAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCA 162538 ||||||| | || | | | ||| || | | ||||||| || ||||| ||| Sbjct 32044 CAGAAAAAATTGGAGTACTGAGAGGTGGTCGTTGTTTGTCTATGCCTGTGTTCTTTACTT 32103 Query 162539 TTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGTT 162598 | || || | | | | || ||| ||||||| | ||| | || | | || Sbjct 32104 TACCATCAATAATCTCATGGTGCTTTTTCCACCTTACTTCTTTAGAGAGAGGCATTTTTT 32163 Query 162599 CGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGG 162658 | || || | || || ||| | ||| |||||| || || || | |||| Sbjct 32164 CCGTTTCCAAGCTATTTTCACCTTTAAGGGCTTTCAGCCTCTCTACTATTTCCTGGTTGG 32223 Query 162659 TCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTC 162718 |||||| |||||||| |||| || || || || | ||||||||||| || || Sbjct 32224 TCTTAATAGGAAAGTCCATGCCACAAAGGTTTATTAAGTATTTCCACTTCGTACTTCTTC 32283 Query 162719 CGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGA 162778 ||| || || | | ||||| | || ||||| || | ||||| || || || || | Sbjct 32284 TGTAGAGGTCTTTCATGCAGTTAATGTCTGCCTGCACCCTGCTCCATGAAGCATATACAA 32343 Query 162779 CGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGG 162838 | ||||| ||| ||| | ||||||||| || ||||| |||||||| ||| |||| | Sbjct 32344 CACTCTCTAACTGGCTGGAAATAAAGACATTATCAAAACATGAAACTATTCCCTTCACAG 32403 Query 162839 CCAGTGAGAA--CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGG 162896 ||| | || || | |||| | || || || | |||||| | ||||||||| Sbjct 32404 -CAGCAAAAAAGGATTCTGGAGACTTT-TTGTCAACATGAATGCAGTAAAAATTCTGAGG 32461 Query 162897 GGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGA 162956 || ||||| | || || | ||| || | |||||| || || || | ||||| || || Sbjct 32462 AGCATAGATTGATCTTAGAAGTCTATCAAGCATCTCAATTTTGTGATAAACCACTATGGA 32521 Query 162957 ATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAG 162994 || || || || || ||||| || || ||||||| Sbjct 32522 GTAAGCAATTGGAAATTCAGCTTCTTCATTGCTGAGAG 32559 >seq9585 Length=150949 Score = 120 bits (132), Expect = 3e-22 Identities = 566/888 (64%), Gaps = 36/888 (4%) Strand=Plus/Minus Query 162120 ATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGA 162179 ||||||||| || || || | ||| || ||| || ||||| || | || || Sbjct 123440 ATCGAACTTATTAGCAAAGAAGTGGTG---GTTTCGCAGCATCCAGTTCAAGTCTCCTAC 123384 Query 162180 TCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATC 162239 ||| ||||| || || || || ||||| | || ||||| || || || | || || | Sbjct 123383 TCCAAACACACAGACAGAGCGAACGTGAATCCCACTGCATGGTGGGTAGGGCGCACCTTT 123324 Query 162240 GTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGA 162299 |||||| || || |||| |||||||| || ||||| || | || | |||||| || Sbjct 123323 AGACACATCACCTTCAAAGTACTGCCACTTCACAAACCTGGTCAGCGCATTCATGTCAGA 123264 Query 162300 GGTGTCGTACTTGTACACTG-ACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 || ||||| | |||| | | || || || | || | || | |||||| | | Sbjct 123263 AACATCATACTTATT-ACTGGAAGAAACTGCACCCAGGACTTCAGGGATTCTCTGAATTG 123205 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418 | |||||||||| || || || || || || || || | |||||| || || ||| Sbjct 123204 TTGCCCACAGGTACTCATCAGGGCTCTAAGTGTCTTTTGCCCACTCAATAAA-----TGA 123150 Query 162419 CCGTTTTATCGTATAGAATGTAAGAGACGTAGGACC----TGGTCACAATAAAGTACGCG 162474 | || | ||| | ||| | || || || | || | ||| || || Sbjct 123149 AAGGATTTTGCTATTT--TCTAATATGTGTTCTACAAATTTGCTAACGACAAAATAGGCA 123092 Query 162475 CTACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACT 162534 ||||||||||| | || | | | ||| || | | ||||||| || ||||| | Sbjct 123091 CTACCAGAAAAAATTGGAGTACTGAGAGGTGGTCGTTGTTTGTCTATGCCTGTGTTCTTT 123032 Query 162535 ACCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGG 162594 ||||| | | | | | || ||| ||||||| | |||| | | ||| ||| Sbjct 123031 ACCAT-----CAATAATCTCATGGTGCTTTTTCCACCTTACT-TCTT--TAG-AGAGGGG 122981 Query 162595 ----TGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTC 162650 | ||| || || | || || || | ||| |||| | || || || Sbjct 122980 CATTTTTTCTGTTTCCAAGCTATTTTCGCCTTTAAGGGCTTTCAACCTCTCTACTATTTC 122921 Query 162651 TAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAAC 162710 | |||||||||| |||||||| |||| ||||| || || | ||||||||||| | Sbjct 122920 CTGGTTGGTCTTAATAGGAAAGTCCATGCCACAGAGGTTTATTAGGTATTTCCACTTTAT 122861 Query 162711 GCTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGC 162770 || || ||| ||||| | | ||||| | || ||||| || | ||||| || || Sbjct 122860 ACTTCTTCTGTAGAGATCTTTCATGCAGTTAATGTCTGCCTGCACCCTGCTCCATGAAGC 122801 Query 162771 GTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCC 162830 || || | |||| ||| ||| | ||||||||| || ||||| |||||||| || Sbjct 122800 ATATACAATGCTCCTTAACTGGCTGGAAATAAAGACATTATCAAAACATGAAACTATTCC 122741 Query 162831 CATCACGGCCAGTGAGAACA----TCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATA 162886 | ||| || ||| | || | || || || || | || || || | |||||| | Sbjct 122740 CTTCATGG-CAGCAAAAAAAGGATTCCGG--CGACTTTTTGTCAACATGAATGCAGTAAA 122684 Query 162887 GATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTA 162946 |||| |||| || ||||| | ||| || | ||| || | |||||| || || || | | Sbjct 122683 AATTCAGAGGAGCATAGATTGACCTTAGAAGTCTATCAAGCATCTCAATTTTGTGATAAA 122624 Query 162947 CCACGATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAG 162994 |||| | || || || | || || || || || || ||||||| Sbjct 122623 CCACAACTGAGTAAGCAACTGGAAATTCTGCTTCTTCATTGCTGAGAG 122576 >seq63 Length=14936771 Score = 114 bits (126), Expect = 1e-20 Identities = 259/387 (67%), Gaps = 2/387 (1%) Strand=Plus/Plus Query 162598 TCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTG 162657 |||| ||| | ||||| | ||| || |||||||| | || || ||||| ||| Sbjct 4701041 TCGGACTCGATGCTGTTCTGCCCCTGCAGCGCCTTCAGATTGCGGACGATCTCGGCGTTG 4701100 Query 162658 GTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGT 162717 ||||| | ||| ||||||||||| ||| || | | || ||| || | | Sbjct 4701101 GTCTTGATGGGGAAGTCGGTGCCACAGGTGTTGAGGAGGTAGCGCCAGGGCACAGGGC-T 4701159 Query 162718 CCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACAC 162776 | | | ||| ||||| | ||||||||| || ||||| | || ||| || || || || Sbjct 4701160 CTGGAGCAGGTCCTGCATACAGTTCAGGTCAGCCTGCAGCCGGGACCAGGAGGCATAGAC 4701219 Query 162777 GACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCAC 162836 ||| |||||| | |||| |||||||| ||| ||| || | | || | ||| Sbjct 4701220 CACGTTCTCCAGGCGGCTGGCCACAAAGACGTTGGGGAAGCAGGCGGCGATGGCTCGCAC 4701279 Query 162837 GGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGG 162896 |||| ||| | | || || | || ||||| | |||||| || ||||| || Sbjct 4701280 GGCCTCCTGGAAGGTGGCTGGCGACTTGCGGTCGACGTGGATGCAGTAGAGGTTCTGGGG 4701339 Query 162897 GGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGA 162956 |||||||| || || ||| | | |||||||||||| || || | ||| | || || || Sbjct 4701340 GGCGTAGACGGACCGCAGGAGCCGCTCGAACATCTCGATTTTGTCGTGGATGACCATGGA 4701399 Query 162957 ATACGCTATGGGGAACTCAGCCTCCTC 162983 || || |||||||| || |||||||| Sbjct 4701400 GTAGGCGATGGGGAAGTCGGCCTCCTC 4701426 >seq371 Length=20460901 Score = 105 bits (116), Expect = 8e-18 Identities = 452/703 (64%), Gaps = 15/703 (2%) Strand=Plus/Minus Query 176946 GCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAA 177005 |||| ||| | ||||| | | || | ||| || ||||||| |||| | || | |||| Sbjct 9084791 GCCAACTCTCTTGGGGAGAGGAAATCTTCCACATGTATGAAAGAGTCTGCTGGAATGTAA 9084732 Query 177006 TTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGAT 177065 ||||| || || ||||| || | || ||||| | ||||| | || |||| ||| | Sbjct 9084731 TTTTCATAGTTTTCTCTGGAAGGGCCCAGTACAACTGGTACTGATCCAGCCAGAAGGGCA 9084672 Query 177066 CGGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAAT 177125 ||| ||||| || ||||| || || | || || || || ||||| | || |||||| Sbjct 9084671 TTGTAAAGTTTCTCAGTAATGTAATCTTTATGAACTGAATTTTCAAATGAAAGGTAGAAT 9084612 Query 177126 TTACA--GGAAGATAGTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGT 177183 ||||| | |||| || || || |||| | ||| | ||| ||||| | | | Sbjct 9084611 TTACAAGTGGAGATGGT--TGGAATCAAGTTTTTATCATTGACATAGTCTCCAAAGGCTT 9084554 Query 177184 TCCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACG 177242 || || ||| || || || | ||| || ||||| ||| || || || || | Sbjct 9084553 GTCCATAGGTATGGATTTCAATATATTTGCTAAGCTCATTGTAATA-CTTGACTCGAGCA 9084495 Query 177243 TGGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGG 177301 || || |||||| || || || ||||| || || || || ||||| | || || Sbjct 9084494 TGCTCAGGGTTCCAGTTACTTACAACCCAACACACCAAGTT-TTCTTTACTTGGCAC--- 9084439 Query 177302 ATTCGATACTAATGCAGTGTCT-CTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCG 177360 ||| | ||| | | | | | | | | | | ||||| ||||| |||||||| | Sbjct 9084438 -TTCAAATGTAAAGGAACTTGTACCAACCATCATGAAGCCATAAGGCACCTGAATATCTG 9084380 Query 177361 AGTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATACC-TTGTTTGAAGGGG 177419 | || || | || || | || || || || || | ||| || || | ||| || | Sbjct 9084379 AATCACGCCGATAAGTCAGGGTCAGGTTAAAGAGATGTTCAATGCCACTCTTTTGTGGAG 9084320 Query 177420 CTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTCC 177479 | | | | || || || || |||||||| ||||| || || || | ||| |||| || | Sbjct 9084319 -TATGAGTTGGAGACTCCAAATTCATCCAAATCCATTTCTGGAATGGTGGCCTGGCTTGC 9084261 Query 177480 GTAGGTAGAGTATAAGGATCTATACTTATCTCTCTGTGGTGAAAGACTACGGCATTGGCT 177539 ||||| | || |||| || || || ||||| |||| || ||||||| || | Sbjct 9084260 TGAGGTAAATTAGTTAGATCCCAGCTGATGTCCCTGTGATGAATGAGAACGGCATGGGAT 9084201 Query 177540 TTGTAATAAACAGATCTGTCTACGGTAACGTGACACGCACGTATGTTAAATCTGGAGCTA 177599 ||| || | || | ||| | || | || ||| || | ||||| || | | Sbjct 9084200 CTGTTGTATAGTGAACGGTCAATAGTCAGATGGCACCCATGGATGTTGAACATCGCTTGG 9084141 Query 177600 CACGCATTTAGATCAAATGGGTGGCCGTAGGGCCACGTCCAGA 177642 || | |||||||||||| || || | ||||| ||||| Sbjct 9084140 CAGGATGTTAGATCAAATGTCTGACCAAATGGCCAAACCCAGA 9084098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576068902828800