Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015 -06-23] 326,828 sequences; 1,595,295,449 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq458 100 9e-18 seq285 100 9e-18 SEQ25884 98.7 3e-17 seq2200 98.7 3e-17 seq443 84.2 7e-13 >seq458 Length=934433 Score = 100 bits (110), Expect = 9e-18 Identities = 63/68 (93%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 ||||||||||| | ||||||| |||||||||||||||||||||||||||||||| ||| | Sbjct 491749 AAGTAGCTCAGCTAGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAGCCCAG 491808 Query 2833 GCTTCAGC 2840 |||||||| Sbjct 491809 GCTTCAGC 491816 >seq285 Length=3013400 Score = 100 bits (110), Expect = 9e-18 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||| | Sbjct 2909352 GGCCGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 2909411 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 2909412 CCCGGGTTTCGGC 2909424 >SEQ25884 Length=2356 Score = 98.7 bits (108), Expect = 3e-17 Identities = 63/69 (91%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 1455 GGCCGAAGTAGCTCAGCTGGGAGAGTGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAG 1396 Query 2828 CCCGGGCTT 2836 || |||||| Sbjct 1395 CCTGGGCTT 1387 >seq2200 Length=25158983 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 22398713 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 22398654 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 22398653 CCGGGTTTCGGC 22398642 >seq443 Length=66565 Score = 84.2 bits (92), Expect = 7e-13 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 ||||||||||| ||||| ||||||||| |||| ||||||||||||||||||||| | || Sbjct 65860 AAGTAGCTCAGCTGGGAAAGCATTAGATTGAACATCTAAAGGTCCCTGGTTCAAGTCTGG 65919 Query 2833 GCTT 2836 |||| Sbjct 65920 GCTT 65923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15792942732060