Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015
-06-23] 326,828 sequences; 1,595,295,449 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq212 123 3e-23
seq95 123 3e-23
seq319586 105 9e-18
seq3026 105 9e-18
seq312388 89.7 7e-13
>seq212
Length=4710727
Score = 123 bits (136), Expect = 3e-23
Identities = 109/136 (80%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
|||||||||| ||||| | ||| ||||| || || | ||||||||| || || | ||| |
Sbjct 4384856 CCTCATCTCTGCTAATAAGTTCATTAGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 4384915
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
| ||||| ||||| |||||||| || || ||||||||||| ||||| ||||| ||||| |
Sbjct 4384916 TCAGCCAGAATATAGCAGCAAAGGAACCCGAAAAGAAGATTCCTTCAACTGCAGCAAAGG 4384975
Query 39759 CAACAAGTCTCTCTCC 39774
|||| | ||||| ||
Sbjct 4384976 CAACCACCCTCTCACC 4384991
Score = 86.0 bits (94), Expect = 9e-12
Identities = 61/70 (87%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 39794 ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 39853
||||||||| | ||||| || ||||||||||| ||||||||||||||||| |||||||||
Sbjct 4387397 ATCCACTTCAGAGCCCAGTCTGCTTTCTTCTTGACACAAGGCATTGTTTCAATAGCATTA 4387456
Query 39854 AAGAGATAAT 39863
|| | | |||
Sbjct 4387457 AATAAAAAAT 4387466
>seq95
Length=9561987
Score = 123 bits (136), Expect = 3e-23
Identities = 100/121 (83%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
||||||||||||| || | ||| |||||||| |||||||||||||||| || | || |
Sbjct 3110867 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 3110808
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
| |||||||| || | ||||| || |||||||||||||| ||||| ||||||||||| |
Sbjct 3110807 TCAGCCAAAAAATTGATGCAAATGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 3110748
Query 39759 C 39759
|
Sbjct 3110747 C 3110747
Score = 93.3 bits (102), Expect = 6e-14
Identities = 78/96 (81%), Gaps = 0/96 (0%)
Strand=Plus/Minus
Query 39310 TGACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCC 39369
|||||| |||||||| | || |||||||| || || ||||| || || || ||||||||
Sbjct 3112188 TGACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAGTTGGTTTTGCC 3112129
Query 39370 TTCCAATGATATATTTTCCATGAAATCAAACGGATT 39405
||||| || || ||||||||||| ||||| |||||
Sbjct 3112128 TTCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 3112093
Score = 87.8 bits (96), Expect = 2e-12
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936
|||||||| ||||| || |||| ||||| |||||||||||||| || ||||| || ||
Sbjct 3108662 ATCTTTAATGTATGTGTCAATTAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGC 3108603
Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCT 39982
||||| || || || ||||| | ||||| || || ||||| |||
Sbjct 3108602 AATCTGGAAGCCATAGAAACAACGGGCTTCTGTGATCTGTACTTCT 3108557
>seq319586
Length=853
Score = 105 bits (116), Expect = 9e-18
Identities = 124/168 (74%), Gaps = 0/168 (0%)
Strand=Plus/Plus
Query 70334 CACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAA 70393
|||| || | ||| || ||||| ||||| ||||| || | || || || ||||| || |
Sbjct 12 CACTGAACACTTTCTTAGTTTCTTTGTGCAAATTGGACACTGCAATCCTCGCTGCCAGGA 71
Query 70394 TAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTA 70453
|||| |||||||| |||| ||||| ||| || || |||| ||||| | ||||| |
Sbjct 72 TAGCGTAGTCAGGGTGTTTGGTAGTCAGAGTTGCAGCCGTTTCAGCAGCCAGAGTATCCA 131
Query 70454 ATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501
||| | || || || || | || ||||||||||| ||||||||||
Sbjct 132 GTTCCACTGTCGTGACACCACTGTACAGCCCTTGAATCACTTTCATGG 179
>seq3026
Length=70695
Score = 105 bits (116), Expect = 9e-18
Identities = 124/168 (74%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 70334 CACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAA 70393
|||| || | ||| || ||||| ||||| ||||| || | || || || ||||| || |
Sbjct 51076 CACTGAACACTTTCTTAGTTTCTTTGTGCAAATTGGACACTGCAATCCTCGCTGCCAGGA 51017
Query 70394 TAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTA 70453
|||| |||||||| |||| ||||| ||| || || |||| ||||| | ||||| |
Sbjct 51016 TAGCGTAGTCAGGGTGTTTGGTAGTCAGAGTTGCAGCCGTTTCAGCAGCCAGAGTATCCA 50957
Query 70454 ATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501
||| | || || || || | || ||||||||||| ||||||||||
Sbjct 50956 GTTCCACTGTCGTGACACCACTGTACAGCCCTTGAATCACTTTCATGG 50909
Score = 93.3 bits (102), Expect = 6e-14
Identities = 123/171 (72%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500
|||| || ||||| ||||| || || |||||| || | || || || || || || |
Sbjct 63914 TCCACCCATAGAAGTGCATGCTGGTGAGTTTGCCGTAGTTGGGTTCTGCAATGTGGATGT 63855
Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560
| | || || || ||||| |||||||||||||| ||||| ||||| || | ||| |||
Sbjct 63854 TGAGAGACTGGCTCTGATCAATGAAAGCTCCTCTGTCTGCTGCCATCTTGAGGATAGTCT 63795
Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611
| || | || ||||| | |||||| | | || || | |||||| ||||
Sbjct 63794 TCTGGGAGATCTCCCACACTGTCTTATAGAGTTGCTTCAAATCATCAGGAA 63744
Score = 89.7 bits (98), Expect = 7e-13
Identities = 127/179 (71%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 68947 GATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAAT 69006
|| || | |||||||||||| ||||||| || | || |||||||| || || || ||
Sbjct 59704 GAACCCTCATATGTTTCATACGGTCCTTGCTCCTGGGCAAGTTCACAGCTGGCTTCCAAA 59645
Query 69007 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCG 69066
||||| |||||||| || || ||||| | || || | || || || |||| |||
Sbjct 59644 GCACCATAATAAATGGTCTCAAAAATTTGCTGGTTCAAGCGCTGGGCCTCAGGACTTTCG 59585
Query 69067 AATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGG 69125
|| ||||| | | || || |||||||||| ||||| || ||||| || || ||
Sbjct 59584 AAAGGATACCTCATCAAGATGAAAGCATCTGCCAGACCCTGCACACCAATGCCAATGGG 59526
Score = 84.2 bits (92), Expect = 3e-11
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778
||||| || || || | |||| || ||||| || |||||||| || || || | |||
Sbjct 61404 TGAAACTCTCCCGAGAGGACTCGGCGTGTGTAGATGTTACTGGTGTAGGGCTCAATGGAT 61345
Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGG 68822
|||||||| ||||| || |||||||| || ||||||||||| ||
Sbjct 61344 TCATTATTGCCCAGGATCTGAGCAGTAGAAGCAGTTGGCATTGG 61301
>seq312388
Length=601
Score = 89.7 bits (98), Expect = 7e-13
Identities = 127/179 (71%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 68947 GATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAAT 69006
|| || | |||||||||||| ||||||| || | || |||||||| || || || ||
Sbjct 348 GAACCCTCATATGTTTCATACGGTCCTTGCTCCTTGGCAAGTTCACAGCTGGCTTCCAAA 407
Query 69007 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCG 69066
||||| |||||||| || || ||||| | || || | || || || |||| |||
Sbjct 408 GCACCATAATAAATGGTCTCAAAAATTTGCTGGTTCAAGCGCTGGGCCTCAGGACTTTCG 467
Query 69067 AATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGG 69125
|| ||||| | | || || |||||||||| ||||| || ||||| || || ||
Sbjct 468 AAAGGATACCTCATCAAGATGAAAGCATCTGCCAGACCCTGCACACCAATGCCAATGGG 526
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 684102537133920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |