Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015 -06-23] 326,828 sequences; 1,595,295,449 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq95 109 4e-19 seq326825 104 2e-17 >seq95 Length=9561987 Score = 109 bits (120), Expect = 4e-19 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||| || | ||||||| || ||||| ||||| || || |||||||| |||||| Sbjct 3108555 CAAGAAGTACAGATCACAGAAGCCCGTTGTTTCTATGGCTTCCAGATTGCCATGGAAAAT 3108614 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| ||||||||||||||||| || || || ||||| |||||| Sbjct 3108615 ATACATTCAGAAATGTACAGTCTTCTAATTGACACATACATTAAAGAT 3108662 Score = 87.8 bits (96), Expect = 1e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 44495 AACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAA 44554 || || ||||| || |||||||| || || ||||||||||||| ||||| ||||| || Sbjct 3112093 AATCCTTTTGACTTCATGGAAAACATCTCTCTGGAAGGCAAAACCAACTTCTTTGAGAAG 3112152 Query 44555 CGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587 || || || ||||||||| | ||||| |||||| Sbjct 3112153 CGAGTAGGTGAATATCAGAGGATGGGAGTCATG 3112185 >seq326825 Length=37256661 Score = 104 bits (114), Expect = 2e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| ||||| ||||| ||| | |||||||| || ||| ||||||||| ||| Sbjct 32814194 TGATGGCTTTGCCTCCTTGCCATGCTCTTTGTCAGTTCTATGTTCTAAATGGTGAATTGT 32814135 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || || | ||||| || || || || ||||||||||| || || || || || || | Sbjct 32814134 CCTGCCAGCTCTATCAGAGGTCTGGAGATATGGGACTAGGAGTGCCCTTCAATATTGCCA 32814075 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 | ||| | |||||||| || ||||| || || || || Sbjct 32814074 GCTATTCACTGCTCACATACATGATAGCCCATGTCAC 32814038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395872846802140