Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015 -06-23] 326,828 sequences; 1,595,295,449 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq285 176 5e-39 seq511 170 2e-37 seq266184 109 6e-19 >seq285 Length=3013400 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || || ||||| || || || ||||||||| | || Sbjct 2917551 ATGCAGATCTTTGTGAAGACCCTGACAGGGAAGACCATCACCCTGGAGGTTGAGCCCAGT 2917610 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| ||||| || |||||||| || ||||||||||| ||| Sbjct 2917611 GACACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAGGAAGGCATTCCTCCAGATCAG 2917670 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 2917671 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTCTCTGACTACAAC 2917730 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| |||||||| || || || ||||||| | ||||| Sbjct 2917731 ATCCAGAAGGAGTCCACTCTGCACCTTGTGCTGCGTCTGAGGGGTGG 2917777 Score = 172 bits (190), Expect = 6e-38 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| ||||| | || || ||||| || || || ||||||||| | | Sbjct 2914605 AATGCAGATCTTTGTGAAGACCTTGACGGGGAAGACCATCACCCTGGAGGTTGAGCCCAG 2914664 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||||| ||| | ||||| ||||| || |||||||| || ||||||||||| || Sbjct 2914665 TGACACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAGGAAGGCATTCCTCCAGATCA 2914724 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || || |||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 2914725 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTCTCTGACTACAA 2914784 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| |||||||| || || || ||||||| | ||||| Sbjct 2914785 CATCCAGAAGGAGTCCACTCTGCACCTTGTGCTGCGTCTGAGGGGTGG 2914832 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || || ||||| || || || ||||||||| | || Sbjct 2917779 ATGCAGATCTTTGTGAAGACCCTGACAGGGAAGACCATCACCCTGGAGGTTGAGCCCAGT 2917838 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| || || || ||||| || || ||||| ||||| ||| Sbjct 2917839 GACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAAGAAGGCATTCCCCCAGATCAG 2917898 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| || ||| | | ||||| || Sbjct 2917899 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCTTGTCCGACTACAAC 2917958 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||||||||| || ||||| || ||||||| | ||||| Sbjct 2917959 ATCCAGAAGGAATCCACCCTGCATCTTGTGCTGCGTCTGAGGGGTGG 2918005 >seq511 Length=1428375 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || |||||||| ||| | | Sbjct 1121182 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGC 1121241 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| || || |||||||||||||| || || || || ||| Sbjct 1121242 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCAG 1121301 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || |||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 1121302 CAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 1121361 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || || ||||||| | ||||| Sbjct 1121362 ATCCAGAAGGAGTCCACCCTGCACCTTGTGCTGCGTCTGAGGGGTGG 1121408 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| | || |||||||| || || || ||||||||| | | Sbjct 1121410 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGC 1121469 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| || || |||||||||||||| || || || || ||| Sbjct 1121470 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCAG 1121529 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || |||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 1121530 CAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 1121589 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || || ||||||| | ||||| Sbjct 1121590 ATCCAGAAGGAGTCCACCCTGCACCTTGTGCTGCGTCTGAGGGGTGG 1121636 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| | || |||||||| || || || ||||||||| | | Sbjct 1121638 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGC 1121697 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| || || |||||||||||||| || || || || ||| Sbjct 1121698 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCAG 1121757 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || |||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 1121758 CAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 1121817 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || || ||||||| | ||||| Sbjct 1121818 ATCCAGAAGGAGTCCACCCTGCACCTTGTGCTGCGTCTGAGGGGTGG 1121864 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| | || |||||||| || || || ||||||||| | | Sbjct 1121866 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGC 1121925 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| || || |||||||||||||| || || || || ||| Sbjct 1121926 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCAG 1121985 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || |||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 1121986 CAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 1122045 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || || ||||||| | ||||| Sbjct 1122046 ATCCAGAAGGAGTCCACCCTGCACCTTGTGCTGCGTCTGAGGGGTGG 1122092 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| | || |||||||| || || || ||||||||| | | Sbjct 1122094 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGC 1122153 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| || || |||||||||||||| || || || || ||| Sbjct 1122154 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCAG 1122213 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || |||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 1122214 CAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 1122273 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || || ||||||| | ||||| Sbjct 1122274 ATCCAGAAGGAGTCCACCCTGCACCTTGTGCTGCGTCTGAGGGGTGG 1122320 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| | || |||||||| || || || ||||||||| | | Sbjct 1122322 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGC 1122381 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| || || |||||||||||||| || || || || ||| Sbjct 1122382 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCAG 1122441 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || |||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 1122442 CAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 1122501 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || || ||||||| | ||||| Sbjct 1122502 ATCCAGAAGGAGTCCACCCTGCACCTTGTGCTGCGTCTGAGGGGTGG 1122548 >seq266184 Length=251 Score = 109 bits (120), Expect = 6e-19 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || |||||||| | ||||| ||||||||||| || || ||||| || | Sbjct 185 ATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTGGAAGTTGAATCTTCT 126 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| | ||| | || ||||| |||||||| || || || || ||||| Sbjct 125 GACACTATTGACAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATCCCACCTGACCAA 66 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | | || ||||||||||||||| | || || | | | ||| | | ||||| || Sbjct 65 CAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTGACTACAAC 6 Query 27586 GTCCA 27590 |||| Sbjct 5 ATCCA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567980482407360