Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015 -06-23] 326,828 sequences; 1,595,295,449 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq63 260 2e-64 seq326825 107 3e-18 >seq63 Length=14936771 Score = 260 bits (288), Expect = 2e-64 Identities = 627/934 (67%), Gaps = 26/934 (3%) Strand=Plus/Minus Query 13671 CCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAG 13730 || ||||||| ||| |||| ||| || |||||||||||||| || || |||||| |||| Sbjct 4701438 CCGCTGAGCCAGGAGGAGGCCGACTTCCCCATCGCCTACTCCATGGTCATCCACGACAAA 4701379 Query 13731 ATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTC 13790 ||||||||||||||||| |||||| || || |||||||||| ||||||||||||||| || Sbjct 4701378 ATCGAGATGTTCGAGCGGCTCCTGCGGTCCGTCTACGCCCCCCAGAACCTCTACTGCATC 4701319 Query 13791 CACGTGGACTCCAAGT--CCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGT 13848 ||||| ||| ||||| || || || ||| || ||| ||||||||| | Sbjct 4701318 CACGTCGACCGCAAGTCGCCAGCCAC--CTTCCAGGAGGCCGTGCGAGCCATCGCCGCCT 4701261 Query 13849 GCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTC 13908 ||||||| ||||| ||||| ||| ||| | ||||||| || | ||||||| | Sbjct 4701260 GCTTCCCCAACGTCTTTGTGGCCAGCCGCCTGGAGAACGTGGTCTATGCCTCCTGGTCCC 4701201 Query 13909 GCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGT 13968 | ||||||| ||||| | ||| ||| ||||||| | ||| || ||| | | Sbjct 4701200 GGCTGCAGGCTGACCTGAACTGTATGCAGGACCTGCTCCAGAGCCCTGTGCCCTGGCGCT 4701141 Query 13969 ACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGG 14028 |||| |||||| || || | |||||||| ||||||||||| |||||||| || Sbjct 4701140 ACCTCCTCAACACCTGTGGCACCGACTTCCCCATCAAGACCAACGCCGAGATCGTCCGCA 4701081 Query 14029 CGCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAGAGCGAG-GGCATGCCCAAC-CACAA 14086 |||||||| ||| || ||||| | | ||| |||| ||| | | | ||| Sbjct 4701080 ATCTGAAGGCGCTGCAGGGGCAGAACAGCATCGAGTCCGAGAGGC--CCTCGTCTGTCAA 4701023 Query 14087 GCTGCACCGC-ATCAGGAAGAGGCACGTGGTGGC-CAGCGGCGGCGTGGTGGTC--AACA 14142 || | | ||| ||| | | |||| ||| | ||| | | || |||| Sbjct 4701022 GCGGGAGCGCTGGCAGTACCA-CCACGAAGTGACACAG-------TTCATCTTCCGAACA 4700971 Query 14143 CCGGCA-GGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTAC 14201 | || ||| || |||||||||| ||| |||||| || | || || || ||| Sbjct 4700970 GCTACACAGAAACAG---CCGCCGCCGCACAGCTCCCCCATGTTCACAGGCAATGCGTAC 4700914 Query 14202 TTTGCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCCTGCTC 14261 | | || ||| |||| |||||||| | || || || | ||||| | | || Sbjct 4700913 ATCGTGGCCACGCGGGGCTTCGTGGAGCACCTCTTCCAGAGCCCCACGGTGCAGCAGTTC 4700854 Query 14262 ATGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGA 14321 | | |||| | ||||||| ||||||||||| |||||| | |||||||| | | | Sbjct 4700853 TTCGAGTGGTCCAAGGACACCTACAGCCCCGAGGAGCACGTCTGGGCCACGCTCAACCGC 4700794 Query 14322 ATGTACGGGACGCCCGGGGGGATCCCCGTTCACGTCAAGTACGACACCTCGGACATGTGG 14381 ||| || ||| |||| | || || ||||| ||| |||||||||| Sbjct 4700793 ATGCCTGGCGTGCCGGGGGCTGTGCCGCACAACAACAAGTTCGAGCTCTCGGACATGAAC 4700734 Query 14382 GCCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTG 14441 |||| || | | | ||||||||||| ||| ||||| || | || || || || | Sbjct 4700733 GCCATGGCCCGCCTGGTCAAGTGGCAGTACCTGGAGGGCGACACCAGCAAGGGCGCACCC 4700674 Query 14442 TACCCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTG 14501 |||||||| ||| ||| | ||| | |||| ||||| ||| || |||| ||| || Sbjct 4700673 TACCCGCCCTGCACCGGTGTGCACCAGCGCGCCGTCTGCGTCTATGGCGCCGGGGACCTG 4700614 Query 14502 AAGTGGCTG-AAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGACGACGAGACGGACGA 14560 ||| || ||| | | || || || ||||||||||||||| | | |||||| Sbjct 4700613 CCCTGGATGCTCCAGCAGCAC-CATCTCTTGGCCAACAAGTTCGACCCCCTGGTGGACGA 4700555 Query 14561 GTTCGCCGTGCGCTGTCTGGACGAGGACGTGCGC 14594 | |||| | | || || || | | || ||||| Sbjct 4700554 GGCCGCCATCCAGTGCCTCGAGGTGCACCTGCGC 4700521 >seq326825 Length=37256661 Score = 107 bits (118), Expect = 3e-18 Identities = 250/376 (66%), Gaps = 6/376 (2%) Strand=Plus/Minus Query 13682 GGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGA---TCGAGAT 13738 ||| |||| || || ||| | |||||| ||| ||| || || ||| | |||| Sbjct 13077785 GGAGGAGGCCGCCTTCCCCGTTGCCTAC---ATCATGACCCTGCATAAGGAGTTTGAGAC 13077729 Query 13739 GTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGA 13798 |||||||| ||| | ||||| | ||| || || ||| ||||||| ||||||||||| Sbjct 13077728 CTTCGAGCGGCTCTTCAGGGCGGTGTACATGCCCCAAAACGTCTACTGTGTCCACGTGGA 13077669 Query 13799 CTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGCTTCCCTAA 13858 | ||| | | || || | | || || | | | | | |||||||| || Sbjct 13077668 CCAGAAGGCACCAGCCGCCTTTAAGCAGGCGGTGCAGCGCCTGGTGGGCTGCTTCCCCAA 13077609 Query 13859 CGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGCAGGC 13918 || ||| ||| | | || | ||||| |||||| | ||| ||| ||| Sbjct 13077608 CGCTTTCCTCGCCTCCAAGATGGAGCGGGTGGTCTACGGCGGCATATCCCGCCTGCGGGC 13077549 Query 13919 CGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGCTCAA 13978 |||||||| ||||||| |||||| |||||| |||| |||| |||||||||||| Sbjct 13077548 CGACCTCAACTGCATGAGAGACCTGCTGGCCTCCGCCGTGCCCTGGAAGTACCTGCTCAA 13077489 Query 13979 CCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGAAGGC 14038 | |||||| ||||||||| | |||||||||| ||| ||| | | | || |||| Sbjct 13077488 CACCTGCGGGCAGGACTTCCCCTTGAAGACCAACCGGGAAATCATCCAGTTCCTCAAGGG 13077429 Query 14039 CCTGGGCGGCAAGAAC 14054 | | | ||||| ||| Sbjct 13077428 CTTCAGAGGCAAAAAC 13077413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 656048019809280