Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015 -06-23] 326,828 sequences; 1,595,295,449 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq326825 118 9e-22 >seq326825 Length=37256661 Score = 118 bits (130), Expect = 9e-22 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 |||||| || |||||||| |||||||| | || || ||||| ||||| ||||| |||| Sbjct 32814040 GACATGGGCTATCATGTATGTGAGCAGTGAATAGCTGGCAATATTGAAGGGCACTCCTAG 32814099 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735 ||||| ||||| || | ||||||||||||||||||| || ||||| || ||||| Sbjct 32814100 TCCCATATCTCCAGACCTCTGATAGAGCTGGCAGGACAATTCACCATTTAGAACATAGAA 32814159 Query 6736 TTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAG 6773 || || || | ||||| || || | |||||||||| Sbjct 32814160 CTGACAAAGAGCATGGCAAGGAGGCAAAGCCATCAGAG 32814197 Score = 118 bits (130), Expect = 9e-22 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 34572 CTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGC 34631 |||||||||| | || || ||||| | || || || ||||| || ||||| || Sbjct 32814197 CTCTGATGGCTTTGCCTCCTTGCCATGCTCTTTGTCAGTTCTATGTTCTAAATGGTGAAT 32814138 Query 34632 TGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTG 34691 ||||||||||||||||||| | || ||||| ||||| |||| ||||| ||||| |||| Sbjct 32814137 TGTCCTGCCAGCTCTATCAGAGGTCTGGAGATATGGGACTAGGAGTGCCCTTCAATATTG 32814078 Query 34692 CTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729 | || || | |||||||| |||||||| || |||||| Sbjct 32814077 CCAGCTATTCACTGCTCACATACATGATAGCCCATGTC 32814040 Score = 86.0 bits (94), Expect = 6e-12 Identities = 108/146 (74%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || || ||||| || ||||||||||| || || || || |||||||| ||||| || Sbjct 32817588 TATTCTGCTCCAAAATGCCTCCACTGGAAACCATAAACAGGTCCCAAGTCCCCCTCTTCT 32817647 Query 6959 CGAGATG-GGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTT 7017 | | || ||| ||| |||| ||||| || || || ||||| | || ||||| ||||| Sbjct 32817648 C-TGTTGCAGAAACCCTGCTTATCCAGGAACTCACGTGACCCATTGGCATCCCAAATCTT 32817706 Query 7018 CACCCCCCGGGACGAGAGCTCCTTGG 7043 ||| ||| | ||||| || |||| Sbjct 32817707 CACACCCTTTGCAGAGAGTTCTTTGG 32817732 Score = 86.0 bits (94), Expect = 6e-12 Identities = 108/146 (74%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 34302 CCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTC 34361 |||| || ||||| | ||| |||||||| ||||| || | ||||| || || || | Sbjct 32817732 CCAAAGAACTCTCTGCAAAGGGTGTGAAGATTTGGGATGCCAATGGGTCACGTGAGTTCC 32817673 Query 34362 TGGACAAGCGGGGGTTCC-CATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTC 34420 |||| |||| ||| ||| || | | || ||||| |||||||| || || || || ||| Sbjct 32817672 TGGATAAGCAGGGTTTCTGCAACA-GAGAAGAGGGGGACTTGGGACCTGTTTATGGTTTC 32817614 Query 34421 CAGTGGAGACACTTTGGGGCGGAGTA 34446 |||||||| || ||||| || || || Sbjct 32817613 CAGTGGAGGCATTTTGGAGCAGAATA 32817588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 446431091204160