Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015
-06-23] 326,828 sequences; 1,595,295,449 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq285 132 1e-25
seq266184 127 5e-24
SEQ30286 107 5e-18
SEQ32532 105 2e-17
>seq285
Length=3013400
Score = 132 bits (146), Expect = 1e-25
Identities = 159/216 (74%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
||| |||||||| |||||||| || || |||| ||||| || | | || | |||||
Sbjct 2914818 CAGCACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGTCCATC 2914759
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| |||||||| ||||| ||||| || | || || || || ||||| |||||||||||
Sbjct 2914758 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGAGGAATGCCTTCCTTGTC 2914699
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
|||||| || ||| ||| || |||||||| || || || || | ||||| ||
Sbjct 2914698 TTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGT 2914639
Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
||| |||||||| || || | || | ||||||||
Sbjct 2914638 CTTCCCCGTCAAGGTCTTCACAAAGATCTGCATTTT 2914603
Score = 132 bits (146), Expect = 1e-25
Identities = 144/191 (75%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
||| ||||| || || |||||||| || |||| ||||| |||| ||| || | ||||||
Sbjct 2917991 CAGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGCCCATC 2917932
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| |||||||| ||||| ||||| || | || || || || ||||| ||||| |||||
Sbjct 2917931 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCTTTGTC 2917872
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
||||||||| ||| ||| || |||||||| || || || || | ||||| ||
Sbjct 2917871 TTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGT 2917812
Query 225681 CTTGCCCGTCA 225691
||| || ||||
Sbjct 2917811 CTTCCCTGTCA 2917801
Score = 120 bits (132), Expect = 7e-22
Identities = 141/191 (74%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
||| |||||||| |||||||| || || |||| ||||| || | | || | |||||
Sbjct 2917763 CAGCACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGTCCATC 2917704
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| |||||||| ||||| ||||| || | || || || || ||||| |||||||||||
Sbjct 2917703 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGAGGAATGCCTTCCTTGTC 2917644
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
|||||| || ||| ||| || |||||||| || || || || | ||||| ||
Sbjct 2917643 TTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGT 2917584
Query 225681 CTTGCCCGTCA 225691
||| || ||||
Sbjct 2917583 CTTCCCTGTCA 2917573
>seq266184
Length=251
Score = 127 bits (140), Expect = 5e-24
Identities = 141/188 (75%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 225529 TGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGT 225588
|||| ||||| || | ||| ||||| || ||||| | ||||| ||||| ||||| | |
Sbjct 1 TGGATGTTGTAGTCAGACAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAAT 60
Query 225589 CGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATG 225648
| ||||||||| || || ||||||||||||||||| |||||| ||| ||| || ||
Sbjct 61 CTTTGTTGGTCAGGTGGGATACCTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATA 120
Query 225649 GTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACT 225708
||||| || | ||| || || | || || ||||| || || ||||| || | ||| | |
Sbjct 121 GTGTCAGAAGATTCAACTTCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATT 180
Query 225709 TGCATTTT 225716
||||| ||
Sbjct 181 TGCATCTT 188
>SEQ30286
Length=7939
Score = 107 bits (118), Expect = 5e-18
Identities = 100/126 (79%), Gaps = 1/126 (1%)
Strand=Plus/Minus
Query 7737 GGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTTC 7796
|||||| ||||| ||||| ||| ||||||||||||| ||||||||||| | | | |
Sbjct 1613 GGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCC 1554
Query 7797 CGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATA-TTTACGCG 7855
||||| || |||||||||||||||||||| |||| | | |||| || | || |||||
Sbjct 1553 CGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGTCGACTTAACGCG 1494
Query 7856 TTAGCT 7861
||||||
Sbjct 1493 TTAGCT 1488
>SEQ32532
Length=2390
Score = 105 bits (116), Expect = 2e-17
Identities = 101/128 (79%), Gaps = 1/128 (1%)
Strand=Plus/Minus
Query 7735 TTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCT 7794
|||||||| ||||| ||||| || ||||||||||||| ||||||||||| | |
Sbjct 1082 TTGGTAAGGTTCTTCGCGTTGCTTCGAATTAAACCACATGCTCCACCGCTTGTGCGGGTC 1023
Query 7795 TCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAAT-ATTTACG 7853
|||||| || |||||||||| ||||||||||||||| | | |||| ||| | || | |
Sbjct 1022 CCCGTCAATTCCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGCGGAGTGCTTAATG 963
Query 7854 CGTTAGCT 7861
||||||||
Sbjct 962 CGTTAGCT 955
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1187537494978632
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |