Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015 -06-23] 326,828 sequences; 1,595,295,449 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq326825 122 7e-23 SEQ43687 82.4 6e-11 seq7380 82.4 6e-11 >seq326825 Length=37256661 Score = 122 bits (134), Expect = 7e-23 Identities = 126/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 ||||| ||||| || || |||||||| ||||| || || |||||||| || || |||||| Sbjct 32814032 AGCCCTGTGACATGGGCTATCATGTATGTGAGCAGTGAATAGCTGGCAATATTGAAGGGC 32814091 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || ||||| || || |||||||| ||||||||||| || | || || | Sbjct 32814092 ACTCCTAGTCCCATATCTCCAGACCTCTGATAGAGCTGGCAGGACAATTCACCATTTAGA 32814151 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 || || |||||||| | |||||||| ||||| | ||||| ||| Sbjct 32814152 ACATAGAACTGACAAAGAGCATGGCAAGGAGGCAAAGCCATCAGA 32814196 Score = 105 bits (116), Expect = 5e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 ||||||||||||||||| || || || ||||||| ||| |||||||| |||| ||| Sbjct 32817600 AAATGCCTCCACTGGAAACCATAAACAGGTCCCAAGTCCCCCTCTTCTCTGTTGCAGAAA 32817659 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 ||| ||| |||| || || | || || ||||| ||||| ||||| || ||||| | Sbjct 32817660 CCCTGCTTATCCAGGAACTCACGTGACCCATTGGCATCCCAAATCTTCACACCCTTTGCA 32817719 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162 ||||| ||||||| ||||| || || Sbjct 32817720 GAGAGTTCTTTGGCATTTGTAGAACC 32817745 >SEQ43687 Length=778 Score = 82.4 bits (90), Expect = 6e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 114287 AGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATG 114346 ||||| |||||||| |||| || | |||||| | | ||| | |||||| || || ||| Sbjct 213 AGCTCTCTGCTGAGCACTATATTAACTCTGTCTTTTAAAGGACGATTCTTCTCAGGAATG 272 Query 114347 GAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 || ||||| || ||| |||||||||||| | ||||| |||||| Sbjct 273 GAAAACCAGGTTTTTTTACCCATTATCAGTGCATTCTGTTTACCT 317 >seq7380 Length=34365 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || ||||| |||||||| |||| || | |||||| | | ||| | |||||| || || Sbjct 23558 TTGAGCTCTCTGCTGAGCACTATATTAATTCTGTCTTTTAAAGGACGATTCTTCTCAGGA 23499 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||| ||||| || ||| |||||||||||| | ||||| |||||| Sbjct 23498 ATGGAAAACCAGGTTTTTTTACCCATTATCAGTGCATTCTGTTTACCT 23451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404545364141608