Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015
-06-23] 326,828 sequences; 1,595,295,449 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq95 107 3e-18
seq3026 105 9e-18
seq312388 84.2 3e-11
>seq95
Length=9561987
Score = 107 bits (118), Expect = 3e-18
Identities = 95/119 (80%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224
||||||||||| || | ||| |||||||| ||||| || ||||||| ||| | ||| ||
Sbjct 3110865 TCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 3110806
Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283
|||||||| |||| || || || ||||||||||| || ||||| || || ||||| ||
Sbjct 3110805 AGCCAAAAAATTGATGCAAATGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAGC 3110747
Score = 100 bits (110), Expect = 4e-16
Identities = 85/105 (81%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 48401 ATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGC 48460
|||||||| ||| || || |||| |||||| |||||||| || || |||||||| || ||
Sbjct 3108662 ATCTTTAATGTATGTGTCAATTAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGC 3108603
Query 48461 CATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC 48505
||||| || || || ||||| | ||||||||||||||||| ||
Sbjct 3108602 AATCTGGAAGCCATAGAAACAACGGGCTTCTGTGATCTGTACTTC 3108558
Score = 91.5 bits (100), Expect = 2e-13
Identities = 77/95 (81%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894
||||| |||||||| | ||||||||||| || || ||||| || || || |||||||||
Sbjct 3112187 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAGTTGGTTTTGCCT 3112128
Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATT 47929
|||| || || |||||||| || ||||| |||||
Sbjct 3112127 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 3112093
>seq3026
Length=70695
Score = 105 bits (116), Expect = 9e-18
Identities = 115/150 (77%), Gaps = 2/150 (1%)
Strand=Plus/Minus
Query 78002 AACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATG 78061
|||||| ||||| ||||||||||| ||||| || |||| || || |||| || || ||
Sbjct 55507 AACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTG 55448
Query 78062 TTCTTCATTTCCTGTATTCTT-TTTAAGATCGAGAAACTCCATAATATCAGAATGCCATG 78120
||||| || || |||||||| |||||| || ||||| || | ||| || |||||||||
Sbjct 55447 CTCTTCTTTCCCAGTATTCTTCTTTAAG-TCAAGAAATTCGAAAATGTCCAAATGCCATG 55389
Query 78121 GTTCTAGATATATTGCCATAACTCCAGGTC 78150
| || ||||| || || | | |||||||
Sbjct 55388 GCTCGAGATAGATGGCAAAGGCCCCAGGTC 55359
Score = 93.3 bits (102), Expect = 6e-14
Identities = 123/171 (72%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908
|||| || ||||| |||||||| || |||||| || | || || || || || || |
Sbjct 63914 TCCACCCATAGAAGTGCATGCTGGTGAGTTTGCCGTAGTTGGGTTCTGCAATGTGGATGT 63855
Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968
| | ||||| || ||||| |||||||||||||| || || ||||| || | || ||||
Sbjct 63854 TGAGAGACTGGCTCTGATCAATGAAAGCTCCTCTGTCTGCTGCCATCTTGAGGATAGTCT 63795
Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019
| || | || ||||| | || || | | ||| || | |||||| ||||
Sbjct 63794 TCTGGGAGATCTCCCACACTGTCTTATAGAGTTGCTTCAAATCATCAGGAA 63744
Score = 89.7 bits (98), Expect = 7e-13
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186
||||| ||||| || | |||| || ||||| || |||||||| || || || | |||
Sbjct 61404 TGAAACTCTCCCGAGAGGACTCGGCGTGTGTAGATGTTACTGGTGTAGGGCTCAATGGAT 61345
Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGG 77230
||||| || |||| || ||||||||||||||||||||||| ||
Sbjct 61344 TCATTATTGCCCAGGATCTGAGCAGTAGAAGCAGTTGGCATTGG 61301
>seq312388
Length=601
Score = 84.2 bits (92), Expect = 3e-11
Identities = 128/180 (71%), Gaps = 2/180 (1%)
Strand=Plus/Plus
Query 77355 GATCCATTATATGTTTCATAAGGTCCTT-CTGTTTCAGCTAGTTCACAACTCGCTTCCAA 77413
|| || | |||||||||||| ||||||| || || || |||||||| || ||||||||
Sbjct 348 GAACCCTCATATGTTTCATACGGTCCTTGCTCCTT-GGCAAGTTCACAGCTGGCTTCCAA 406
Query 77414 TGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATC 77473
|| || |||||||| || || ||||| | || || | || || ||| ||| ||
Sbjct 407 AGCACCATAATAAATGGTCTCAAAAATTTGCTGGTTCAAGCGCTGGGCCTCAGGACTTTC 466
Query 77474 AAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGG 77533
|| ||||| | | || || |||||||| | ||||| || ||||| ||||| ||
Sbjct 467 GAAAGGATACCTCATCAAGATGAAAGCATCTGCCAGACCCTGCACACCAATGCCAATGGG 526
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 691830834817920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |