Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015
-06-23] 326,828 sequences; 1,595,295,449 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq95 98.7 1e-15
seq3026 93.3 6e-14
seq319586 91.5 2e-13
>seq95
Length=9561987
Score = 98.7 bits (108), Expect = 1e-15
Identities = 93/119 (78%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713
||||||||||| || | ||| |||||||| ||||| |||||||||| ||| | || ||
Sbjct 3110865 TCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 3110806
Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGC 46772
|||||||| || | || || || ||||||||||| || ||||| || || || || ||
Sbjct 3110805 AGCCAAAAAATTGATGCAAATGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAGC 3110747
Score = 96.9 bits (106), Expect = 5e-15
Identities = 85/106 (80%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949
|||||||| ||||| || |||| |||||| |||||||||||||| || ||||| || ||
Sbjct 3108662 ATCTTTAATGTATGTGTCAATTAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGC 3108603
Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCT 46995
||||| || || || ||||| | ||||| || |||||||| |||
Sbjct 3108602 AATCTGGAAGCCATAGAAACAACGGGCTTCTGTGATCTGTACTTCT 3108557
Score = 93.3 bits (102), Expect = 6e-14
Identities = 78/96 (81%), Gaps = 0/96 (0%)
Strand=Plus/Minus
Query 46323 TGACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCC 46382
|||||| |||||||| | || ||||||||||| || ||||| || || || ||||||||
Sbjct 3112188 TGACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAGTTGGTTTTGCC 3112129
Query 46383 TTCCAATGATATATTTTCCATAAAATCAAACGGATT 46418
||||| || || |||||||| || ||||| |||||
Sbjct 3112128 TTCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 3112093
>seq3026
Length=70695
Score = 93.3 bits (102), Expect = 6e-14
Identities = 123/171 (72%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503
|||| || ||||| |||||||| || |||||| || | || || || || || || |
Sbjct 63914 TCCACCCATAGAAGTGCATGCTGGTGAGTTTGCCGTAGTTGGGTTCTGCAATGTGGATGT 63855
Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563
| | ||||| || ||||| |||||||||||||| || || ||||| || | || ||||
Sbjct 63854 TGAGAGACTGGCTCTGATCAATGAAAGCTCCTCTGTCTGCTGCCATCTTGAGGATAGTCT 63795
Query 75564 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 75614
| || | || ||||| | || || | | ||| || | |||||| ||||
Sbjct 63794 TCTGGGAGATCTCCCACACTGTCTTATAGAGTTGCTTCAAATCATCAGGAA 63744
Score = 91.5 bits (100), Expect = 2e-13
Identities = 122/167 (73%), Gaps = 2/167 (1%)
Strand=Plus/Minus
Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398
|| || | ||| || ||||| ||||| | ||| || || || || || || || || ||
Sbjct 51074 CTGAACACTTTCTTAGTTTCTTTGTGCAAATTGGACACTGCAATCCTCGCTGCCAGGATA 51015
Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAG-GTGGCTGCTATTTCTGCCGCTAAAGTATCTAA 77457
|| |||||||| |||| ||||| ||| || || || |||| || || | |||||| |
Sbjct 51014 GCGTAGTCAGGGTGTTTGGTAGT-CAGAGTTGCAGCCGTTTCAGCAGCCAGAGTATCCAG 50956
Query 77458 TTCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504
||| | || || || || | || ||||||||||| ||||||||||
Sbjct 50955 TTCCACTGTCGTGACACCACTGTACAGCCCTTGAATCACTTTCATGG 50909
Score = 89.7 bits (98), Expect = 7e-13
Identities = 103/136 (76%), Gaps = 2/136 (1%)
Strand=Plus/Minus
Query 76597 AACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACG 76656
||| || ||||| ||||||||||| ||||| || |||| || || |||| || || |
Sbjct 55507 AACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTG 55448
Query 76657 TTCTTCATTTCCTGTATTCTT-TTTAAGATCTAGGAACTCCATAATATCAGAATGCCATG 76715
||||| || || |||||||| |||||| || || || || | ||| || |||||||||
Sbjct 55447 CTCTTCTTTCCCAGTATTCTTCTTTAAG-TCAAGAAATTCGAAAATGTCCAAATGCCATG 55389
Query 76716 GTTCTAGATATATCGC 76731
| || ||||| || ||
Sbjct 55388 GCTCGAGATAGATGGC 55373
>seq319586
Length=853
Score = 91.5 bits (100), Expect = 2e-13
Identities = 122/167 (73%), Gaps = 2/167 (1%)
Strand=Plus/Plus
Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398
|| || | ||| || ||||| ||||| | ||| || || || || || || || || ||
Sbjct 14 CTGAACACTTTCTTAGTTTCTTTGTGCAAATTGGACACTGCAATCCTCGCTGCCAGGATA 73
Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAG-GTGGCTGCTATTTCTGCCGCTAAAGTATCTAA 77457
|| |||||||| |||| ||||| ||| || || || |||| || || | |||||| |
Sbjct 74 GCGTAGTCAGGGTGTTTGGTAGT-CAGAGTTGCAGCCGTTTCAGCAGCCAGAGTATCCAG 132
Query 77458 TTCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504
||| | || || || || | || ||||||||||| ||||||||||
Sbjct 133 TTCCACTGTCGTGACACCACTGTACAGCCCTTGAATCACTTTCATGG 179
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 710021813448960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |