Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015 -06-23] 326,828 sequences; 1,595,295,449 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq95 98.7 1e-15 seq3026 93.3 6e-14 seq319586 91.5 2e-13 >seq95 Length=9561987 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 ||||||||||| || | ||| |||||||| ||||| |||||||||| ||| | || || Sbjct 3110865 TCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 3110806 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGC 46772 |||||||| || | || || || ||||||||||| || ||||| || || || || || Sbjct 3110805 AGCCAAAAAATTGATGCAAATGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAGC 3110747 Score = 96.9 bits (106), Expect = 5e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 |||||||| ||||| || |||| |||||| |||||||||||||| || ||||| || || Sbjct 3108662 ATCTTTAATGTATGTGTCAATTAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGC 3108603 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCT 46995 ||||| || || || ||||| | ||||| || |||||||| ||| Sbjct 3108602 AATCTGGAAGCCATAGAAACAACGGGCTTCTGTGATCTGTACTTCT 3108557 Score = 93.3 bits (102), Expect = 6e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 46323 TGACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCC 46382 |||||| |||||||| | || ||||||||||| || ||||| || || || |||||||| Sbjct 3112188 TGACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAGTTGGTTTTGCC 3112129 Query 46383 TTCCAATGATATATTTTCCATAAAATCAAACGGATT 46418 ||||| || || |||||||| || ||||| ||||| Sbjct 3112128 TTCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 3112093 >seq3026 Length=70695 Score = 93.3 bits (102), Expect = 6e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| || ||||| |||||||| || |||||| || | || || || || || || | Sbjct 63914 TCCACCCATAGAAGTGCATGCTGGTGAGTTTGCCGTAGTTGGGTTCTGCAATGTGGATGT 63855 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 | | ||||| || ||||| |||||||||||||| || || ||||| || | || |||| Sbjct 63854 TGAGAGACTGGCTCTGATCAATGAAAGCTCCTCTGTCTGCTGCCATCTTGAGGATAGTCT 63795 Query 75564 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 75614 | || | || ||||| | || || | | ||| || | |||||| |||| Sbjct 63794 TCTGGGAGATCTCCCACACTGTCTTATAGAGTTGCTTCAAATCATCAGGAA 63744 Score = 91.5 bits (100), Expect = 2e-13 Identities = 122/167 (73%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 || || | ||| || ||||| ||||| | ||| || || || || || || || || || Sbjct 51074 CTGAACACTTTCTTAGTTTCTTTGTGCAAATTGGACACTGCAATCCTCGCTGCCAGGATA 51015 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAG-GTGGCTGCTATTTCTGCCGCTAAAGTATCTAA 77457 || |||||||| |||| ||||| ||| || || || |||| || || | |||||| | Sbjct 51014 GCGTAGTCAGGGTGTTTGGTAGT-CAGAGTTGCAGCCGTTTCAGCAGCCAGAGTATCCAG 50956 Query 77458 TTCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504 ||| | || || || || | || ||||||||||| |||||||||| Sbjct 50955 TTCCACTGTCGTGACACCACTGTACAGCCCTTGAATCACTTTCATGG 50909 Score = 89.7 bits (98), Expect = 7e-13 Identities = 103/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 76597 AACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACG 76656 ||| || ||||| ||||||||||| ||||| || |||| || || |||| || || | Sbjct 55507 AACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTG 55448 Query 76657 TTCTTCATTTCCTGTATTCTT-TTTAAGATCTAGGAACTCCATAATATCAGAATGCCATG 76715 ||||| || || |||||||| |||||| || || || || | ||| || ||||||||| Sbjct 55447 CTCTTCTTTCCCAGTATTCTTCTTTAAG-TCAAGAAATTCGAAAATGTCCAAATGCCATG 55389 Query 76716 GTTCTAGATATATCGC 76731 | || ||||| || || Sbjct 55388 GCTCGAGATAGATGGC 55373 >seq319586 Length=853 Score = 91.5 bits (100), Expect = 2e-13 Identities = 122/167 (73%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 || || | ||| || ||||| ||||| | ||| || || || || || || || || || Sbjct 14 CTGAACACTTTCTTAGTTTCTTTGTGCAAATTGGACACTGCAATCCTCGCTGCCAGGATA 73 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAG-GTGGCTGCTATTTCTGCCGCTAAAGTATCTAA 77457 || |||||||| |||| ||||| ||| || || || |||| || || | |||||| | Sbjct 74 GCGTAGTCAGGGTGTTTGGTAGT-CAGAGTTGCAGCCGTTTCAGCAGCCAGAGTATCCAG 132 Query 77458 TTCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504 ||| | || || || || | || ||||||||||| |||||||||| Sbjct 133 TTCCACTGTCGTGACACCACTGTACAGCCCTTGAATCACTTTCATGG 179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 710021813448960