Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015 -06-23] 326,828 sequences; 1,595,295,449 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq189 161 1e-34 seq669 95.1 2e-14 >seq189 Length=739144 Score = 161 bits (178), Expect = 1e-34 Identities = 181/242 (75%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||||| ||| |||||||||||| |||||||| |||||| ||||| || |||||||| Sbjct 477043 ATGAGTCTAGTAGTCTGGAACAGTCGCTCGTCATCCCATTCCGGATGCTCCTGTTTCAGG 476984 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 | || || || | |||||||| |||||||| || || || |||||||| | || || Sbjct 476983 ATGTCACAGACTCGATTGTGTTCTCTGAGCCATATTGTAGCATACATCATTAAACCTGGG 476924 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 |||| ||||| |||| || || |||| | ||| || || || || | ||||| Sbjct 476923 ACCAAACCAAACACCTCCTGCCCAACAGAGAACTGCAGGTGCTCAGGAACGTGAGGAGGG 476864 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 || | ||| | ||||| ||| || || | ||| ||||||||||| |||||||||||| Sbjct 476863 TACAACATCTCTGCCTGGGTGTCCTTCACTGTGGGTGGATACATTTCCCCGTCAATCATC 476804 Query 9484 TG 9485 || Sbjct 476803 TG 476802 Score = 149 bits (164), Expect = 9e-31 Identities = 224/317 (71%), Gaps = 1/317 (0%) Strand=Plus/Minus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 |||| || | || ||||| || || || ||| | |||| || ||| | | || Sbjct 479000 GGAAGGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGGAAGGAGGCAG 478941 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 | |||| || | || ||||| | ||| ||||| |||||||||||||||||| | |||| Sbjct 478940 TATTGATTATTTCAAAGCCCACTTTTCCTCCGAAAGTGCTGGGCTTCCAGTACTCGGGGG 478881 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 ||||||| |||| |||| || ||||| |||||||| || || || | || | || Sbjct 478880 AGCAGATAGCGTTTCCCATCAGTCCTTTCAGGGAGAATGGCGCTCCAATTTCTACCATCG 478821 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 | || || ||||||||| || || ||||| || || | || || | |||||||||| Sbjct 478820 TTTCGCCAAAGATGGCGCCTGGTCGCGGCTTCTCTACGAGGAGGCCTGGATACAGCTCCA 478761 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT-T 8587 ||| || | |||||| ||||| | ||||| || || || || ||||||||||| Sbjct 478760 TAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCTGCTGCCATTTCTTTTTCTCCTGTAA 478701 Query 8588 TTATTAATAAAAAATAA 8604 ||||| || || || || Sbjct 478700 TTATTGATGAATAAAAA 478684 Score = 113 bits (124), Expect = 6e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 9286 GGATGTTCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCG 9345 ||||| || |||||||| | || || || | |||||||| |||||||| || || || Sbjct 468529 GGATGCTCCTGTTTCAGGATGTCACAGACTCGATTGTGTTCTCTGAGCCATATTGTAGCA 468470 Query 9346 TACATCATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTT 9405 |||||||| | || || |||| ||||| |||| || || |||| | ||| || Sbjct 468469 TACATCATTAAACCTGGGACCAAACCAAACACCTCCTGCCCAACAGAGAACTGCAGGTGC 468410 Query 9406 TCGGGCACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATAC 9465 || || || | ||||| || | ||| | ||||| ||| || || | ||| |||||| Sbjct 468409 TCAGGAACGTGAGGAGGGTACAACATCTCTGCCTGGGTGTCCTTCACTGTGGGTGGATAC 468350 Query 9466 ATTTCACCGTCAATCATCTG 9485 ||||| |||||||||||||| Sbjct 468349 ATTTCCCCGTCAATCATCTG 468330 Score = 91.5 bits (100), Expect = 2e-13 Identities = 121/167 (72%), Gaps = 1/167 (1%) Strand=Plus/Minus Query 9910 ACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 9969 |||||| || || | || ||||| || || || || || || || | |||| ||| Sbjct 457698 ACCTTTAACACCCATTGGTGTTGGGCAGTCATGTCCTACTGGTGGCAGGCTTCTTGTGTA 457639 Query 9970 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATGGG 10029 ||||||||||||||| | |||||||||||| ||| | ||||| |||||| | || Sbjct 457638 ATAGGAGAGATTGGAATAGGCTTCCCAGCTTTTGTAGTTATAGTCACTGTTGTAAGTTGG 457579 Query 10030 AGGGCTGTCAATCAAATCGGATCTACCTGAGCCAGCAAAAAATAGAA 10076 ||||||||||||| || ||||| ||| | | |||||| |||| Sbjct 457578 TGGGCTGTCAATCAGATGTGATCTTGCTG-GAAAAAAAAAAAAAGAA 457533 Score = 91.5 bits (100), Expect = 2e-13 Identities = 121/167 (72%), Gaps = 1/167 (1%) Strand=Plus/Minus Query 9910 ACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 9969 |||||| || || | || ||||| || || || || || || || | |||| ||| Sbjct 466643 ACCTTTAACACCCATTGGTGTTGGGCAGTCATGTCCTACTGGTGGCAGGCTTCTTGTGTA 466584 Query 9970 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATGGG 10029 ||||||||||||||| | |||||||||||| ||| | ||||| |||||| | || Sbjct 466583 ATAGGAGAGATTGGAATAGGCTTCCCAGCTTTTGTAGTTATAGTCACTGTTGTAAGTTGG 466524 Query 10030 AGGGCTGTCAATCAAATCGGATCTACCTGAGCCAGCAAAAAATAGAA 10076 ||||||||||||| || ||||| ||| | | |||||| |||| Sbjct 466523 TGGGCTGTCAATCAGATGTGATCTTGCTG-GAAAAAAAAAAAAAGAA 466478 Score = 91.5 bits (100), Expect = 2e-13 Identities = 121/167 (72%), Gaps = 1/167 (1%) Strand=Plus/Minus Query 9910 ACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 9969 |||||| || || | || ||||| || || || || || || || | |||| ||| Sbjct 475115 ACCTTTAACACCCATTGGTGTTGGGCAGTCATGTCCTACTGGTGGCAGGCTTCTTGTGTA 475056 Query 9970 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATGGG 10029 ||||||||||||||| | |||||||||||| ||| | ||||| |||||| | || Sbjct 475055 ATAGGAGAGATTGGAATAGGCTTCCCAGCTTTTGTAGTTATAGTCACTGTTGTAAGTTGG 474996 Query 10030 AGGGCTGTCAATCAAATCGGATCTACCTGAGCCAGCAAAAAATAGAA 10076 ||||||||||||| || ||||| ||| | | |||||| |||| Sbjct 474995 TGGGCTGTCAATCAGATGTGATCTTGCTG-GAAAAAAAAAAAAAGAA 474950 Score = 89.7 bits (98), Expect = 7e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 10387 CTTACGAGTTGTGCAGTCATGGTCGTAGAAACCCGTATGCGTGCAATCGCATTTGTACTG 10446 |||||| |||||||||| | | || || ||||| |||||| ||||| | ||| | Sbjct 456831 CTTACGCGTTGTGCAGTTCTCCCCATAAAACCCCGTCCTCGTGCAGTCGCACTCGTATCG 456772 Query 10447 ATGGAACCCCACGGTCATGCAGATGCCTCTGTTTTGACACGGATGGGAGCAACAAGGGTT 10506 || ||| ||| |||||||||| | || ||||| || ||||| | ||||| |||||||| Sbjct 456771 ATCGAATCCCGCGGTCATGCATACCCCCCTGTTCTGGCACGGGTTTGAGCAGCAAGGGTT 456712 Query 10507 GGCT 10510 |||| Sbjct 456711 GGCT 456708 Score = 89.7 bits (98), Expect = 7e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 10387 CTTACGAGTTGTGCAGTCATGGTCGTAGAAACCCGTATGCGTGCAATCGCATTTGTACTG 10446 |||||| |||||||||| | | || || ||||| |||||| ||||| | ||| | Sbjct 465776 CTTACGCGTTGTGCAGTTCTCCCCATAAAACCCCGTCCTCGTGCAGTCGCACTCGTATCG 465717 Query 10447 ATGGAACCCCACGGTCATGCAGATGCCTCTGTTTTGACACGGATGGGAGCAACAAGGGTT 10506 || ||| ||| |||||||||| | || ||||| || ||||| | ||||| |||||||| Sbjct 465716 ATCGAATCCCGCGGTCATGCATACCCCCCTGTTCTGGCACGGGTTTGAGCAGCAAGGGTT 465657 Query 10507 GGCT 10510 |||| Sbjct 465656 GGCT 465653 Score = 89.7 bits (98), Expect = 7e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 10387 CTTACGAGTTGTGCAGTCATGGTCGTAGAAACCCGTATGCGTGCAATCGCATTTGTACTG 10446 |||||| |||||||||| | | || || ||||| |||||| ||||| | ||| | Sbjct 474248 CTTACGCGTTGTGCAGTTCTCCCCATAAAACCCCGTCCTCGTGCAGTCGCACTCGTATCG 474189 Query 10447 ATGGAACCCCACGGTCATGCAGATGCCTCTGTTTTGACACGGATGGGAGCAACAAGGGTT 10506 || ||| ||| |||||||||| | || ||||| || ||||| | ||||| |||||||| Sbjct 474188 ATCGAATCCCGCGGTCATGCATACCCCCCTGTTCTGGCACGGGTTTGAGCAGCAAGGGTT 474129 Query 10507 GGCT 10510 |||| Sbjct 474128 GGCT 474125 >seq669 Length=1422838 Score = 95.1 bits (104), Expect = 2e-14 Identities = 142/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 ||||||| ||| | || || ||||||| || |||||||| ||||||||| | |||| Sbjct 421583 TCTTGACTATCTCAAAGCCAGTTGCTCCGCCAAACGTGCTGGGTTTCCAGTACTCGGGGG 421524 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 |||||||| ||| | | || || || ||||| |||||||| || | ||| | |||| Sbjct 421523 AGCAGATGGGGTTTCCGAGAAGCCCCTTCAGGGAAAACGGAGCTCCAATCTCCACCATGC 421464 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 | || || || | | | ||| |||| || || | || || || ||| | ||||| Sbjct 421463 TTTCCCCAAAAAGTGAATCGGGCTGGGGTTTCTCAAGCAGCAAGCCCACGTAAAACTCCA 421404 Query 8529 CAGCCTCGACGTCTCCGTAAAG 8550 || |||| |||||| || || Sbjct 421403 GGGCATCGATGTCTCCATACAG 421382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 713948107365120