Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015
-06-23] 326,828 sequences; 1,595,295,449 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq285 140 8e-28
seq511 131 4e-25
seq266184 107 5e-18
SEQ29648 91.5 4e-13
seq1866 91.5 4e-13
>seq285
Length=3013400
Score = 140 bits (154), Expect = 8e-28
Identities = 159/209 (76%), Gaps = 6/209 (3%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || || ||||| || || ||||| || || |||||||| ||||| || || |||
Sbjct 2917782 CAGATCTTTGTGAAGACCCTGACAGGGAAGACCATCACCCTGGAGGTTGA--GCCCAGTG 2917839
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||| ||||| ||||| ||||| || ||||||||||| || || || || ||||
Sbjct 2917840 ACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAAGAAGGCATTCCCCCAGATCAGC 2917899
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAAC 178100
| | || ||||| || || || ||||| |||||||| | || |||| |||| || |||
Sbjct 2917900 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCAC-CTTGTCCGACTACAAC 2917958
Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129
|||| || ||||| || |||||||||||
Sbjct 2917959 ATCCAGAAGGAATCCACCCTGCATCTTGT 2917987
>seq511
Length=1428375
Score = 131 bits (144), Expect = 4e-25
Identities = 155/208 (75%), Gaps = 4/208 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981
|| || || ||||| || | || || || || |||||||||||||| | ||| || |
Sbjct 1121413 CAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTCGAGGTTG--AGCCCAGCG 1121470
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||| ||||| ||||| ||||| |||||||| || || ||||| || || ||||
Sbjct 1121471 ACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCAGC 1121530
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| || || ||||| || || || ||||| |||||||| | || || |||| || |||
Sbjct 1121531 AGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAACA 1121590
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129
|||| || || || || ||||| |||||
Sbjct 1121591 TCCAGAAGGAGTCCACCCTGCACCTTGT 1121618
Score = 131 bits (144), Expect = 4e-25
Identities = 155/208 (75%), Gaps = 4/208 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981
|| || || ||||| || | || || || || |||||||||||||| | ||| || |
Sbjct 1121641 CAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTCGAGGTTG--AGCCCAGCG 1121698
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||| ||||| ||||| ||||| |||||||| || || ||||| || || ||||
Sbjct 1121699 ACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCAGC 1121758
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| || || ||||| || || || ||||| |||||||| | || || |||| || |||
Sbjct 1121759 AGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAACA 1121818
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129
|||| || || || || ||||| |||||
Sbjct 1121819 TCCAGAAGGAGTCCACCCTGCACCTTGT 1121846
Score = 131 bits (144), Expect = 4e-25
Identities = 155/208 (75%), Gaps = 4/208 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981
|| || || ||||| || | || || || || |||||||||||||| | ||| || |
Sbjct 1121869 CAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTCGAGGTTG--AGCCCAGCG 1121926
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||| ||||| ||||| ||||| |||||||| || || ||||| || || ||||
Sbjct 1121927 ACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCAGC 1121986
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| || || ||||| || || || ||||| |||||||| | || || |||| || |||
Sbjct 1121987 AGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAACA 1122046
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129
|||| || || || || ||||| |||||
Sbjct 1122047 TCCAGAAGGAGTCCACCCTGCACCTTGT 1122074
Score = 131 bits (144), Expect = 4e-25
Identities = 155/208 (75%), Gaps = 4/208 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981
|| || || ||||| || | || || || || |||||||||||||| | ||| || |
Sbjct 1122097 CAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTCGAGGTTG--AGCCCAGCG 1122154
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||| ||||| ||||| ||||| |||||||| || || ||||| || || ||||
Sbjct 1122155 ACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCAGC 1122214
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| || || ||||| || || || ||||| |||||||| | || || |||| || |||
Sbjct 1122215 AGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAACA 1122274
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129
|||| || || || || ||||| |||||
Sbjct 1122275 TCCAGAAGGAGTCCACCCTGCACCTTGT 1122302
Score = 131 bits (144), Expect = 4e-25
Identities = 155/208 (75%), Gaps = 4/208 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981
|| || || ||||| || | || || || || |||||||||||||| | ||| || |
Sbjct 1122325 CAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTCGAGGTTG--AGCCCAGCG 1122382
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||| ||||| ||||| ||||| |||||||| || || ||||| || || ||||
Sbjct 1122383 ACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCAGC 1122442
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| || || ||||| || || || ||||| |||||||| | || || |||| || |||
Sbjct 1122443 AGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAACA 1122502
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129
|||| || || || || ||||| |||||
Sbjct 1122503 TCCAGAAGGAGTCCACCCTGCACCTTGT 1122530
>seq266184
Length=251
Score = 107 bits (118), Expect = 5e-18
Identities = 135/183 (74%), Gaps = 2/183 (1%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||| || ||| | || || || || || ||||| || || ||| || |||
Sbjct 182 CAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTGGAAGTTGAATCTTCTGAC 123
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || ||||| ||||||||| ||||| ||||| ||||| || ||||| |||
Sbjct 122 ACTATTGACAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATCCCACCTGACCAACAA 63
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102
|| | ||||| || || || || | ||||| || || || |||| | || || ||| |
Sbjct 62 AGATTGATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAAC-CTTGTCTGACTACAACAT 4
Query 178103 CCA 178105
|||
Sbjct 3 CCA 1
>SEQ29648
Length=521
Score = 91.5 bits (100), Expect = 4e-13
Identities = 83/103 (81%), Gaps = 4/103 (4%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981
|| || |||||||| || || || || ||||| |||||||||||||||| ||| || |
Sbjct 24 CAGATCTTCGTGAAGACCCTGACGGGCAAAACCATCACCCTCGAGGTGG--AGCCCAGCG 81
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024
|||||||||||||||| || ||||| |||||||| |||||
Sbjct 82 ACACCATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAAGG 124
>seq1866
Length=106666
Score = 91.5 bits (100), Expect = 4e-13
Identities = 83/103 (81%), Gaps = 4/103 (4%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || |||||||| || || || || ||||| ||||||||||||||||| || |||
Sbjct 7271 CAGATCTTCGTGAAGACCCTGACGGGCAAAACCATCACCCTCGAGGTGGA--GCCCAGCG 7214
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024
|||||||||||||||| || ||||| |||||||| |||||
Sbjct 7213 ACACCATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAAGG 7171
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1198690595160632
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |