Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015 -06-23] 326,828 sequences; 1,595,295,449 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq285 140 8e-28 seq511 131 4e-25 seq266184 107 5e-18 SEQ29648 91.5 4e-13 seq1866 91.5 4e-13 >seq285 Length=3013400 Score = 140 bits (154), Expect = 8e-28 Identities = 159/209 (76%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || ||||| || || |||||||| ||||| || || ||| Sbjct 2917782 CAGATCTTTGTGAAGACCCTGACAGGGAAGACCATCACCCTGGAGGTTGA--GCCCAGTG 2917839 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| ||||| ||||| || ||||||||||| || || || || |||| Sbjct 2917840 ACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAAGAAGGCATTCCCCCAGATCAGC 2917899 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAAC 178100 | | || ||||| || || || ||||| |||||||| | || |||| |||| || ||| Sbjct 2917900 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCAC-CTTGTCCGACTACAAC 2917958 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || ||||| || ||||||||||| Sbjct 2917959 ATCCAGAAGGAATCCACCCTGCATCTTGT 2917987 >seq511 Length=1428375 Score = 131 bits (144), Expect = 4e-25 Identities = 155/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || || ||||| || | || || || || |||||||||||||| | ||| || | Sbjct 1121413 CAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTCGAGGTTG--AGCCCAGCG 1121470 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| ||||| ||||| |||||||| || || ||||| || || |||| Sbjct 1121471 ACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCAGC 1121530 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || ||||| || || || ||||| |||||||| | || || |||| || ||| Sbjct 1121531 AGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAACA 1121590 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||| ||||| Sbjct 1121591 TCCAGAAGGAGTCCACCCTGCACCTTGT 1121618 Score = 131 bits (144), Expect = 4e-25 Identities = 155/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || || ||||| || | || || || || |||||||||||||| | ||| || | Sbjct 1121641 CAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTCGAGGTTG--AGCCCAGCG 1121698 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| ||||| ||||| |||||||| || || ||||| || || |||| Sbjct 1121699 ACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCAGC 1121758 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || ||||| || || || ||||| |||||||| | || || |||| || ||| Sbjct 1121759 AGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAACA 1121818 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||| ||||| Sbjct 1121819 TCCAGAAGGAGTCCACCCTGCACCTTGT 1121846 Score = 131 bits (144), Expect = 4e-25 Identities = 155/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || || ||||| || | || || || || |||||||||||||| | ||| || | Sbjct 1121869 CAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTCGAGGTTG--AGCCCAGCG 1121926 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| ||||| ||||| |||||||| || || ||||| || || |||| Sbjct 1121927 ACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCAGC 1121986 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || ||||| || || || ||||| |||||||| | || || |||| || ||| Sbjct 1121987 AGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAACA 1122046 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||| ||||| Sbjct 1122047 TCCAGAAGGAGTCCACCCTGCACCTTGT 1122074 Score = 131 bits (144), Expect = 4e-25 Identities = 155/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || || ||||| || | || || || || |||||||||||||| | ||| || | Sbjct 1122097 CAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTCGAGGTTG--AGCCCAGCG 1122154 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| ||||| ||||| |||||||| || || ||||| || || |||| Sbjct 1122155 ACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCAGC 1122214 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || ||||| || || || ||||| |||||||| | || || |||| || ||| Sbjct 1122215 AGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAACA 1122274 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||| ||||| Sbjct 1122275 TCCAGAAGGAGTCCACCCTGCACCTTGT 1122302 Score = 131 bits (144), Expect = 4e-25 Identities = 155/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || || ||||| || | || || || || |||||||||||||| | ||| || | Sbjct 1122325 CAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTCGAGGTTG--AGCCCAGCG 1122382 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| ||||| ||||| |||||||| || || ||||| || || |||| Sbjct 1122383 ACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCAGC 1122442 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || ||||| || || || ||||| |||||||| | || || |||| || ||| Sbjct 1122443 AGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAACA 1122502 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||| ||||| Sbjct 1122503 TCCAGAAGGAGTCCACCCTGCACCTTGT 1122530 >seq266184 Length=251 Score = 107 bits (118), Expect = 5e-18 Identities = 135/183 (74%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || ||| | || || || || || ||||| || || ||| || ||| Sbjct 182 CAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTGGAAGTTGAATCTTCTGAC 123 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| ||||||||| ||||| ||||| ||||| || ||||| ||| Sbjct 122 ACTATTGACAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATCCCACCTGACCAACAA 63 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | ||||| || || || || | ||||| || || || |||| | || || ||| | Sbjct 62 AGATTGATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAAC-CTTGTCTGACTACAACAT 4 Query 178103 CCA 178105 ||| Sbjct 3 CCA 1 >SEQ29648 Length=521 Score = 91.5 bits (100), Expect = 4e-13 Identities = 83/103 (81%), Gaps = 4/103 (4%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || |||||||| || || || || ||||| |||||||||||||||| ||| || | Sbjct 24 CAGATCTTCGTGAAGACCCTGACGGGCAAAACCATCACCCTCGAGGTGG--AGCCCAGCG 81 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 |||||||||||||||| || ||||| |||||||| ||||| Sbjct 82 ACACCATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAAGG 124 >seq1866 Length=106666 Score = 91.5 bits (100), Expect = 4e-13 Identities = 83/103 (81%), Gaps = 4/103 (4%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || ||||| ||||||||||||||||| || ||| Sbjct 7271 CAGATCTTCGTGAAGACCCTGACGGGCAAAACCATCACCCTCGAGGTGGA--GCCCAGCG 7214 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 |||||||||||||||| || ||||| |||||||| ||||| Sbjct 7213 ACACCATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAAGG 7171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1198690595160632