Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquila_20chrysaetos_20canadensis_20[refseq_20GCF_5F000766835.1_20201 4-10-14] 1,142 sequences; 1,192,743,076 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq55 127 1e-24 seq39 93.3 3e-14 >seq55 Length=7031396 Score = 127 bits (140), Expect = 1e-24 Identities = 94/110 (85%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| || ||| ||||||| || | ||||||||||||||||||||| || ||||||||||| Sbjct 6882432 CTTGAGCTCCCTGCTGAGCACTATATTAATTCTGCCTTTTAAAGGACGATTCTTCTCAGG 6882373 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCTG 4399 ||| |||||||| || ||||||||||| |||| | |||||||||| ||| Sbjct 6882372 AATGGAGAACCAGGTTTTTTTACCCATTATCAGTGCATTCTGTTTACCTG 6882323 >seq39 Length=9497852 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/184 (73%), Gaps = 5/184 (3%) Strand=Plus/Plus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| ||||||||||| || ||||||||||| || ||||| || ||||| | ||| || | Sbjct 343643 CTTTGTATTCTGCTCCAAAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAATCCCCCT 343702 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | |||||| ||||| | ||||| | || | |||||||| |||||||||| Sbjct 343703 CCTCTCTGGTGCTGAAACCCTGCTTATCCAGGAACTCACGTGATCCATTAGCATCCCAAA 343762 Query 102153 TGTGCACGCCAGCTGCTGATAGCTCTTT-GCTGTCAGTAGATCCTCTGATAAACCACA-A 102210 | | ||| || ||| || |||||||| || || ||||| || || | ||| |||| | Sbjct 343763 TCTTCACACCTTTTGCAGAGAGCTCTTTAGCATTC-GTAGAACC-CT-ACAAAACACAGA 343819 Query 102211 CAGT 102214 |||| Sbjct 343820 CAGT 343823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361246172060642