Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquila_20chrysaetos_20canadensis_20[refseq_20GCF_5F000766835.1_20201 4-10-14] 1,142 sequences; 1,192,743,076 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq11 161 1e-34 seq154 127 2e-24 >seq11 Length=17727835 Score = 161 bits (178), Expect = 1e-34 Identities = 208/286 (73%), Gaps = 1/286 (0%) Strand=Plus/Plus Query 83119 GGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCA 83178 |||| |||||| | || | | |||||||||||||||||||| | |||||||||||| Sbjct 16920494 GGGCACGCCGTCGGGGCCGATGAGGAACTTCTCGAAGTTCCAGGAGATGTCGTTGCGGCA 16920553 Query 83179 CACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGG 83238 || || |||||| ||| ||| |||| | ||| |||| | ||||||| || Sbjct 16920554 GACGGGGGACCAGATGATGTACTGCGGGTTGGTCATCAGCGAGGAGGGGTCGTCGTGCGG 16920613 Query 83239 CGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTC 83298 ||||| ||||||| |||||||||||||| || || || | ||||| ||||| Sbjct 16920614 GAAGGGCAGCGCCTCTCTCAGGAAGGCGAAGAGGGGGTGCGCGTTCTTCCCGTTCACCTC 16920673 Query 83299 GCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAG 83358 |||||||||||| || | || || |||| | | ||||| || ||||| ||||||| ||| Sbjct 16920674 GCACTTCTCGAACAGGAGGAAATTGGGCTTGTACCCGTTGCCGGGACGAACGTGCTCCAG 16920733 Query 83359 GGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGAC-CGAA 83403 || ||| |||||| | ||| || ||||||| | ||| |||| Sbjct 16920734 CGAGAGCAGGATCTCCTCGTTCGTAGCATTTTCCTAGGGACGCGAA 16920779 >seq154 Length=1499584 Score = 127 bits (140), Expect = 2e-24 Identities = 223/312 (71%), Gaps = 16/312 (5%) Strand=Plus/Minus Query 83056 GAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGG-CA-GCGGTGGCTGTACCTG 83113 ||| ||| || |||||||||||||| || || ||| || |||| ||||||| | Sbjct 555266 GAGGAGGCGCTGGATGTCGGGCTCCA--GCTGGGCGGTGGGCATGCGGGGGCTGTAGCGC 555209 Query 83114 CGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTG 83173 || | || || || | |||||||| ||||||||| |||||||||| | |||| | Sbjct 555208 CGGAAAGGTTCCCCCTCGGGACCCACCAGGAACTTCTCAAAGTTCCAGGAGATGTCGGAG 555149 Query 83174 CGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGC-GTGCTCATGTCGTC 83232 || | ||| || ||||| | || | || ||| ||| || |||| | ||||| Sbjct 555148 CGCCGCACCGGGCTCCAGGTGAGGAAGCGAGGTTCGGTCATCAGGTGTGC-CGCCTCGTC 555090 Query 83233 GCTAGGCGCCGGCAGG---GCCTCTCGTAGGAAGGCGAAGAGCGGATG--TGCCCTTGCA 83287 | ||||| |||||| |||| || ||| ||||||||| || || || ||| || Sbjct 555089 GGCCGGCGCGGGCAGGTGAGCCT-TC--AGGTAGGCGAAGACGGGGTGGGTGTCCT-GC- 555035 Query 83288 CCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGG 83347 ||||| |||| |||||||| |||||| | ||||| ||||||||||| ||| || || Sbjct 555034 CCGTTCACCTGGCACTTCTGGAAGAGGGTGAAGTTGGGCTCGAAGCCACCCCCCGGCCGC 554975 Query 83348 ACGTGCTTCAGG 83359 |||||||||||| Sbjct 554974 ACGTGCTTCAGG 554963 Score = 118 bits (130), Expect = 1e-21 Identities = 121/156 (78%), Gaps = 3/156 (2%) Strand=Plus/Minus Query 83388 TTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTA 83447 || |||||| || || ||||| || ||||| || ||||| ||||||| ||| | || Sbjct 554844 TTACCTGGTAGCCAAATTGGTTGCAGGGGAAGCCCAGCACGACCAGCCGCCGGGGG--TA 554787 Query 83448 GGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACG 83507 | | | ||||||| ||| | ||| ||||| ||||| |||||| | ||||||||||||| Sbjct 554786 GCGGGCT-TGCAGCTGGTTGAGCTGGGTGTAATCCCGCACCGTGGTGCCTCAGAGGGACG 554728 Query 83508 CTACGTTCTCGATGAGCAAGACCCGGCCCCGTAAGA 83543 | |||||||||||||| | || |||||||| |||| Sbjct 554727 CCACGTTCTCGATGAGGACCACGCGGCCCCGGAAGA 554692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608788109425680