Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquila_20chrysaetos_20canadensis_20[refseq_20GCF_5F000766835.1_20201 4-10-14] 1,142 sequences; 1,192,743,076 total letters Query= NC_002229.3 Length=177874 Score E Sequences producing significant alignments: (Bits) Value seq33 109 6e-19 >seq33 Length=10211343 Score = 109 bits (120), Expect = 6e-19 Identities = 216/311 (69%), Gaps = 34/311 (11%) Strand=Plus/Plus Query 139828 CTCCCCTAGCCCGCTGAAAGTCAGCGAGT-AAACAGCGGGCG-----GAGGGAGCGCGGC 139881 ||||||| | ||||||||||||||||||| ||||||||| || | ||||||||||| Sbjct 1517329 CTCCCCTCGTCCGCTGAAAGTCAGCGAGTAAAACAGCGGACGGGCGCGGGGGAGCGCGGC 1517388 Query 139882 GACAGTACCATCAATACCTCCGATTAGGGTTAGACACAGCGGAGCCT-TCCACCCGCCAC 139940 ||| | ||||||||||| |||| | | |||| ||||||||||| Sbjct 1517389 AGCAG---------------CCATTAGGGTTAGTCACACCAGGGCCTCCCCACCCGCCAC 1517433 Query 139941 GTGTGCCGGGGGAACCCCGCGTGGGGCTCTT--GTAGCTTCCTCCGCCTACGCCCACCGC 139998 | | |||||| |||| || |||||| || ||| ||| ||||| |||||| |||| Sbjct 1517434 GCGACGCGGGGGCGCCCC-CGCGGGGCTTTTTAAAAGCCTCCGCCGCC-ACGCCCGCCGC 1517491 Query 139999 GCGCCTATTGGCC----GGGCTGTACGCTGCCGCGTAGCTATTGGCGGCGGGGAGGAGAG 140054 || | ||||| | |||| | || | || | |||||| |||| | |||||| Sbjct 1517492 GCCTCCATTGGTCGGAAGGGCACCCCCCTCCTCCGCCACCATTGGCTGCGGCGGGGAGAG 1517551 Query 140055 CGAGCAGAGAGGG-GCCGGT-GCGGGAGTTTGGAACTCCGCGGTCATTCAT-CTCCCGCC 140111 | | || ||||| | || ||||||||||||||| | || ||||| | | |||||| Sbjct 1517552 -GGGGAGGGAGGGAGAGAGTGGCGGGAGTTTGGAACGCTCGGGCCATTCGTCCCCCCGCC 1517610 Query 140112 ACGCCCCATGC 140122 | || | ||| Sbjct 1517611 GCACCACGTGC 1517621 Score = 109 bits (120), Expect = 6e-19 Identities = 216/311 (69%), Gaps = 34/311 (11%) Strand=Plus/Minus Query 1498 GCATGGGGCGTGGCGGGAG-ATGAATGACCGCGGAGTTCCAAACTCCCGC-ACCGGC-CC 1554 ||| | || | |||||| | | ||||| || | ||||||||||||||| || | || Sbjct 1517621 GCACGTGGTGCGGCGGGGGGACGAATGGCCCGAGCGTTCCAAACTCCCGCCACTCTCTCC 1517562 Query 1555 CTCTCTGCTCGCTCTCCTCCCCGCCGCCAATAGCTACGCGGCAGCGTACAGCCC----GG 1610 ||| || | | |||||| | |||| |||||| | || | || | |||| | Sbjct 1517561 CTCCCTCCCC-CTCTCCCCGCCGCAGCCAATGGTGGCGGAGGAGGGGGGTGCCCTTCCGA 1517503 Query 1611 CCAATAGGCGCGCGGTGGGCGTAGGCGGAGGAAGCTAC--AAGAGCCCCACGCGGGGTTC 1668 ||||| | |||||| |||||| ||||| ||| ||| || |||||| || |||| | Sbjct 1517502 CCAATGGAGGCGCGGCGGGCGT-GGCGGCGGAGGCTTTTAAAAAGCCCCGCG-GGGGCGC 1517445 Query 1669 CCCCGGCACACGTGGCGGGTGGA-AGGCTCCGCTGTGTCTAACCCTAATCGGAGGTATTG 1727 ||||| | |||||||||||| |||| | | |||| ||||||||||| | Sbjct 1517444 CCCCGCGTCGCGTGGCGGGTGGGGAGGCCCTGGTGTGACTAACCCTAATGG--------- 1517394 Query 1728 ATGGTACTGTCGCCGCGCTCCCTC-----CGCCCGCTGTTT-ACTCGCTGACTTTCAGCG 1781 ||| ||||||||||| | || ||||||||| |||||||||||||||||| Sbjct 1517393 ------CTGCTGCCGCGCTCCCCCGCGCCCGTCCGCTGTTTTACTCGCTGACTTTCAGCG 1517340 Query 1782 GGCTAGGGGAG 1792 | | ||||||| Sbjct 1517339 GACGAGGGGAG 1517329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569060676542880