Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquila_20chrysaetos_20canadensis_20[refseq_20GCF_5F000766835.1_20201
4-10-14] 1,142 sequences; 1,192,743,076 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq49 107 2e-18
seq36 93.3 4e-14
seq80 89.7 5e-13
>seq49
Length=8140862
Score = 107 bits (118), Expect = 2e-18
Identities = 113/149 (76%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107
||||| |||||| || ||||| || ||||| ||||| |||||||| || || || ||
Sbjct 7588657 ACCTCATCTTTGCTGGTATACTCCACTATTTCTGTACACAGATTGCTGCATTTGATGGTC 7588598
Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167
|| || || ||| ||||| || || ||||| || || ||||| ||||||||||| |||
Sbjct 7588597 CCTAAGTTCTGCTGATTGCTCTTCCGGTTGCAAGAGTCTTTGTACAGCATGTACGGTGTG 7588538
Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196
|| ||||| ||| || || ||||| ||
Sbjct 7588537 CCAGTCTCTGTCTGAGATTCAATGATAGC 7588509
>seq36
Length=10026654
Score = 93.3 bits (102), Expect = 4e-14
Identities = 145/206 (70%), Gaps = 1/206 (0%)
Strand=Plus/Plus
Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246
||||| ||||| || || || ||||| ||||| ||||| || |||||| | || ||||||
Sbjct 5148109 TCAAA-ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAA 5148167
Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306
|| |||| | || | ||||| | || ||||||||||||| | || ||
Sbjct 5148168 CCCAGTGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCT 5148227
Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGAT 31366
|| |||||| | || || || |||||||| ||| ||||||| | || || |||
Sbjct 5148228 GATCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCCGAC 5148287
Query 31367 TATAACATTCAAAAAGAATCGACTCT 31392
|| ||||| || || ||||| || ||
Sbjct 5148288 TACAACATCCAGAAGGAATCCACCCT 5148313
>seq80
Length=5371318
Score = 89.7 bits (98), Expect = 5e-13
Identities = 157/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || || || ||||| ||||| ||||| || || ||| | || ||||| ||
Sbjct 4804974 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATAACCCTGGAAGTTGAGCCCAGT 4804915
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | || | ||||| | || ||||||||||||| | || || || |||
Sbjct 4804914 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 4804855
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||| | || || || |||||||| ||| ||||||| || || || || |||
Sbjct 4804854 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 4804795
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
|| || || ||||| || || ||||| || || | ||||||| ||||
Sbjct 4804794 ATCCAGAAGGAATCCACCCTGCATCTTGTGCTGCGCTTGAGGGGTGGTA 4804746
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445760036684640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |